RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 LRCH2Q5VUJ6 765 aa8.76□□□□□ -1.01
CD44-211ENST00000442151 KRT40Q6A162 431 aa8.76□□□□□ -1.01
CD44-211ENST00000442151 EFCAB12Q6NXP0 572 aa8.76□□□□□ -1.01
CD44-211ENST00000442151 ABI1Q8IZP0 508 aa8.76□□□□□ -1.01
CD44-211ENST00000442151 BLIDQ8IZY5 108 aa8.76□□□□□ -1.01
CD44-211ENST00000442151 NEK9Q8TD19 979 aa8.76□□□□□ -1.01
CD44-211ENST00000442151 CRYGNQ8WXF5 182 aa8.76□□□□□ -1.01
CD44-211ENST00000442151 PHKBQ93100 1093 aa8.76□□□□□ -1.01
CD44-211ENST00000442151 FAM20AQ96MK3 541 aa8.76□□□□□ -1.01
CD44-211ENST00000442151 CDCA3Q99618 268 aaPredicted RBP8.76□□□□□ -1.01
CD44-211ENST00000442151 SLKQ9H2G2 1235 aaPredicted RBP8.76□□□□□ -1.01
CD44-211ENST00000442151 AGO3Q9H9G7 860 aaKnown RBP8.76□□□□□ -1.01
CD44-211ENST00000442151 ERVK-5Q9HDB9 667 aa8.76□□□□□ -1.01
CD44-211ENST00000442151 DACT1Q9NYF0 836 aa8.76□□□□□ -1.01
CD44-211ENST00000442151 DAXXQ9UER7 740 aaPredicted RBP8.76□□□□□ -1.01
CD44-211ENST00000442151 AKT3Q9Y243 479 aa8.76□□□□□ -1.01
CD44-211ENST00000442151 GINS2Q9Y248 185 aa8.76□□□□□ -1.01
CD44-211ENST00000442151 SIP14410 1827 aa8.76□□□□□ -1.01
CD44-211ENST00000442151 EOMESO95936 686 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 CCNE2O96020 404 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 OATP04181 439 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 LAG3P18627 525 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 SSTR3P32745 418 aaPredicted RBP8.75□□□□□ -1.01
CD44-211ENST00000442151 KRT17Q04695 432 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 TBC1D8BQ0IIM8 1120 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 TMEM62Q0P6H9 643 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 NTRK3Q16288 839 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 TCEAL5Q5H9L2 206 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 TMEM31Q5JXX7 168 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 MIER3Q7Z3K6 550 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 CCDC60Q8IWA6 550 aaPredicted RBP8.75□□□□□ -1.01
CD44-211ENST00000442151 GJD3Q8N144 294 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 DAGLBQ8NCG7 672 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 SLC5A5Q92911 643 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 SCLT1Q96NL6 688 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 ADAM2Q99965 735 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 GCOM2Q9BZD3 368 aaPredicted RBP8.75□□□□□ -1.01
CD44-211ENST00000442151 CHST12Q9NRB3 414 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 TMEM161AQ9NX61 479 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 CLDND1Q9NY35 253 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 STK39Q9UEW8 545 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 ST3GAL5Q9UNP4 418 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 PLAGL2Q9UPG8 496 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 HCN4Q9Y3Q4 1203 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 TELO2Q9Y4R8 837 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 MUC3AQ02505 3323 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 CCDC194A0A1B0GVG4 234 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 CPA1P15085 419 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 COL9A1P20849 921 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 EIF4BP23588 611 aaKnown RBP8.75□□□□□ -1.01
CD44-211ENST00000442151 PPM1AP35813 382 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 FAM189BP81408 668 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 OTUD6AQ7L8S5 288 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 FAM178BQ8IXR5 827 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 MICAL1Q8TDZ2 1067 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 TBCKQ8TEA7 893 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 TRAPPC12Q8WVT3 735 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 NIFKQ9BYG3 293 aaKnown RBP8.75□□□□□ -1.01
CD44-211ENST00000442151 VPS54Q9P1Q0 977 aa8.75□□□□□ -1.01
CD44-211ENST00000442151 NOC2LQ9Y3T9 749 aaKnown RBP8.75□□□□□ -1.01
CD44-211ENST00000442151 RALGAPA2Q2PPJ7 1873 aa8.74□□□□□ -1.01
CD44-211ENST00000442151 DOCK5Q9H7D0 1870 aa8.74□□□□□ -1.01
CD44-211ENST00000442151 PI4K2BG5E9Z4 385 aa8.74□□□□□ -1.01
CD44-211ENST00000442151 TBX3O15119 743 aa8.74□□□□□ -1.01
CD44-211ENST00000442151 MSH4O15457 936 aa8.74□□□□□ -1.01
CD44-211ENST00000442151 GAS2O43903 313 aaKnown RBP8.74□□□□□ -1.01
CD44-211ENST00000442151 GPR37L1O60883 481 aa8.74□□□□□ -1.01
CD44-211ENST00000442151 C22orf31O95567 290 aa8.74□□□□□ -1.01
CD44-211ENST00000442151 NLRP11P59045 1033 aaKnown RBP8.74□□□□□ -1.01
CD44-211ENST00000442151 NCBP1Q09161 790 aaKnown RBP8.74□□□□□ -1.01
CD44-211ENST00000442151 RTN4RL1Q86UN2 441 aaPredicted RBP8.74□□□□□ -1.01
CD44-211ENST00000442151 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.74□□□□□ -1.01
CD44-211ENST00000442151 MRPL9Q9BYD2 267 aaKnown RBP8.74□□□□□ -1.01
CD44-211ENST00000442151 TMEM117Q9H0C3 514 aa8.74□□□□□ -1.01
CD44-211ENST00000442151 PPP4R2Q9NY27 417 aa8.74□□□□□ -1.01
CD44-211ENST00000442151 LZTS1Q9Y250 596 aa8.74□□□□□ -1.01
CD44-211ENST00000442151 TTC28Q96AY4 2481 aa8.74□□□□□ -1.01
CD44-211ENST00000442151 PRRC2BQ5JSZ5 2229 aaKnown RBP8.74□□□□□ -1.01
CD44-211ENST00000442151 TBKBP1A7MCY6 615 aa8.73□□□□□ -1.01
CD44-211ENST00000442151 DDX11L8A8MPP1 907 aa8.73□□□□□ -1.01
CD44-211ENST00000442151 C9IYK1 514 aa8.73□□□□□ -1.01
CD44-211ENST00000442151 GRM6O15303 877 aa8.73□□□□□ -1.01
CD44-211ENST00000442151 ASAP2O43150 1006 aa8.73□□□□□ -1.01
CD44-211ENST00000442151 SFPQP23246 707 aaKnown RBP eCLIP8.73□□□□□ -1.01
CD44-211ENST00000442151 PSMC5P62195 406 aa8.73□□□□□ -1.01
CD44-211ENST00000442151 SMAD4Q13485 552 aaKnown RBP8.73□□□□□ -1.01
CD44-211ENST00000442151 COL9A3Q14050 684 aaPredicted RBP8.73□□□□□ -1.01
CD44-211ENST00000442151 TRIM29Q14134 588 aa8.73□□□□□ -1.01
CD44-211ENST00000442151 COL19A1Q14993 1142 aa8.73□□□□□ -1.01
CD44-211ENST00000442151 KIZQ2M2Z5 673 aa8.73□□□□□ -1.01
CD44-211ENST00000442151 PPP4R3AQ6IN85 833 aa8.73□□□□□ -1.01
CD44-211ENST00000442151 ZNF410Q86VK4 478 aa8.73□□□□□ -1.01
CD44-211ENST00000442151 SLFN12Q8IYM2 578 aa8.73□□□□□ -1.01
CD44-211ENST00000442151 TMEM87AQ8NBN3 555 aa8.73□□□□□ -1.01
CD44-211ENST00000442151 SPPL3Q8TCT6 385 aa8.73□□□□□ -1.01
CD44-211ENST00000442151 NLRP7Q8WX94 980 aa8.73□□□□□ -1.01
CD44-211ENST00000442151 RC3H2Q9HBD1 1191 aaKnown RBP8.73□□□□□ -1.01
CD44-211ENST00000442151 NGRNQ9NPE2 291 aaKnown RBP8.73□□□□□ -1.01
CD44-211ENST00000442151 DDX25Q9UHL0 483 aaKnown RBP8.73□□□□□ -1.01
CD44-211ENST00000442151 CD207Q9UJ71 328 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms