RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 FAM47DPA6NHR8 397 aa7.65□□□□□ -1.19
VPS53-204ENST00000437048 ARMCX4Q5H9R4 360 aa7.65□□□□□ -1.19
VPS53-204ENST00000437048 C11orf88Q6PI97 169 aa7.65□□□□□ -1.19
VPS53-204ENST00000437048 CARD9Q9H257 536 aa7.65□□□□□ -1.19
VPS53-204ENST00000437048 A2MP01023 1474 aa7.65□□□□□ -1.19
VPS53-204ENST00000437048 IRX5P78411 483 aaPredicted RBP7.65□□□□□ -1.19
VPS53-204ENST00000437048 TMPRSS15P98073 1019 aa7.65□□□□□ -1.19
VPS53-204ENST00000437048 GABPAQ06546 454 aa7.65□□□□□ -1.19
VPS53-204ENST00000437048 TRIM71Q2Q1W2 868 aaKnown RBP7.65□□□□□ -1.19
VPS53-204ENST00000437048 ARMCX2Q7L311 632 aa7.65□□□□□ -1.19
VPS53-204ENST00000437048 ELMSAN1Q6PJG2 1045 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 TRMT1LQ7Z2T5 733 aaKnown RBP7.64□□□□□ -1.19
VPS53-204ENST00000437048 ERICH1Q86X53 443 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 PHF21AQ96BD5 680 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 COPG2Q9UBF2 871 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 AHCYL1O43865 530 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 ECM2O94769 699 aaPredicted RBP7.64□□□□□ -1.19
VPS53-204ENST00000437048 GHRP10912 638 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 CNTFP26441 200 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 RAD23BP54727 409 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 RCN2Q14257 317 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 TRPM8Q7Z2W7 1104 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 HDDC2Q7Z4H3 204 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 DGCR14Q96DF8 476 aaKnown RBP7.64□□□□□ -1.19
VPS53-204ENST00000437048 SIRT1Q96EB6 747 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 CCT8L2Q96SF2 557 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 PRKAA2P54646 552 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 PSMA8Q8TAA3 256 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 MAP4K1Q92918 833 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 SCYL1Q96KG9 808 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 ABCB6Q9NP58 842 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 AASDHPPTQ9NRN7 309 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 CCDC87Q9NVE4 849 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 PTCH1Q13635 1447 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 MYO1DO94832 1006 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 KCNQ4P56696 695 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 THOC5Q13769 683 aaKnown RBP7.64□□□□□ -1.19
VPS53-204ENST00000437048 PRMT9Q6P2P2 845 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 PPARGC1AQ9UBK2 798 aaKnown RBP7.64□□□□□ -1.19
VPS53-204ENST00000437048 E7EWF7 191 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 M0QZ92 97 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 SERPINH1P50454 418 aaKnown RBP7.64□□□□□ -1.19
VPS53-204ENST00000437048 PLTPP55058 493 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 MTA1Q13330 715 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 PHACTR3Q96KR7 559 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 HMG20AQ9NP66 347 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 WDR62O43379 1518 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 CCT8L1PA6NM43 557 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 SGK1O00141 431 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 KCTD16Q68DU8 428 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 PIK3AP1Q6ZUJ8 805 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 GPT2Q8TD30 523 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 TUFT1Q9NNX1 390 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 ABHD10Q9NUJ1 306 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 PANK4Q9NVE7 773 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 HPS5Q9UPZ3 1129 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 CD19P15391 556 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 ODR4Q5SWX8 454 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 NLRP9Q7RTR0 991 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 AFAP1Q8N556 730 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 STARD13Q9Y3M8 1113 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 TNNI1P19237 187 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 FNTAP49354 379 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 STILQ15468 1287 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 SGSM1Q2NKQ1 1148 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 RAPH1Q70E73 1250 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 BBS7Q8IWZ6 715 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 FANCBQ8NB91 859 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 CAB39Q9Y376 341 aaPredicted RBP7.64□□□□□ -1.19
VPS53-204ENST00000437048 SF3B1O75533 1304 aaKnown RBP eCLIP7.64□□□□□ -1.191e-10■■■■■ 107
VPS53-204ENST00000437048 DNAJC24Q6P3W2 148 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 MIGA2Q7L4E1 593 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 ADCK1Q86TW2 530 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 GPBP1Q86WP2 473 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 CLMNQ96JQ2 1002 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 KIF17Q9P2E2 1029 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 CAPN9O14815 690 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 TRPA1O75762 1119 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 CDK17Q00537 523 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 MYL7Q01449 175 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 PABPC4Q13310 644 aaKnown RBP eCLIP7.64□□□□□ -1.19
VPS53-204ENST00000437048 CENPPQ6IPU0 288 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 TBC1D1Q86TI0 1168 aaPredicted RBP7.64□□□□□ -1.19
VPS53-204ENST00000437048 FAM227BQ96M60 508 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 COPRSQ9NQ92 184 aa7.64□□□□□ -1.19
VPS53-204ENST00000437048 ZKSCAN7Q9P0L1 754 aaPredicted RBP7.64□□□□□ -1.19
VPS53-204ENST00000437048 TK2O00142 265 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 NR2F2P24468 414 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 ZNF174Q15697 407 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 APOA5Q6Q788 366 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 KRT74Q7RTS7 529 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 ZSCAN10Q96SZ4 725 aaPredicted RBP7.63□□□□□ -1.19
VPS53-204ENST00000437048 ANGPT2O15123 496 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 ITIH2P19823 946 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 YARSP54577 528 aaKnown RBP7.63□□□□□ -1.19
VPS53-204ENST00000437048 KCNB1Q14721 858 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 CCDC144BQ3MJ40 725 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.63□□□□□ -1.19
VPS53-204ENST00000437048 ENKURQ8TC29 256 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 ARHGEF1Q92888 912 aaKnown RBP7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms