RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 PDIA4P13667 645 aaKnown RBP12.77□□□□□ -0.37
COL28A1-203ENST00000435823 RPA1P27694 616 aa12.77□□□□□ -0.37
COL28A1-203ENST00000435823 CCT6AP40227 531 aaKnown RBP12.77□□□□□ -0.37
COL28A1-203ENST00000435823 GPC3P51654 580 aa12.77□□□□□ -0.37
COL28A1-203ENST00000435823 EMC2Q15006 297 aa12.77□□□□□ -0.37
COL28A1-203ENST00000435823 KRT79Q5XKE5 535 aa12.77□□□□□ -0.37
COL28A1-203ENST00000435823 ARL6IP4Q66PJ3 421 aaKnown RBP12.77□□□□□ -0.37
COL28A1-203ENST00000435823 SNX29Q8TEQ0 813 aa12.77□□□□□ -0.37
COL28A1-203ENST00000435823 TCP11Q8WWU5 503 aa12.77□□□□□ -0.37
COL28A1-203ENST00000435823 FAM161BQ96MY7 647 aa12.77□□□□□ -0.37
COL28A1-203ENST00000435823 NACC1Q96RE7 527 aa12.77□□□□□ -0.37
COL28A1-203ENST00000435823 GCOM2Q9BZD3 368 aaPredicted RBP12.77□□□□□ -0.37
COL28A1-203ENST00000435823 ADAMTS10Q9H324 1103 aa12.77□□□□□ -0.37
COL28A1-203ENST00000435823 SEMA6BQ9H3T3 888 aa12.77□□□□□ -0.37
COL28A1-203ENST00000435823 ZNF576Q9H609 170 aa12.77□□□□□ -0.37
COL28A1-203ENST00000435823 DHX33Q9H6R0 707 aaKnown RBP12.77□□□□□ -0.37
COL28A1-203ENST00000435823 ATP6V0A4Q9HBG4 840 aa12.77□□□□□ -0.37
COL28A1-203ENST00000435823 ERVK-5Q9HDB9 667 aa12.77□□□□□ -0.37
COL28A1-203ENST00000435823 BMP2KQ9NSY1 1161 aaPredicted RBP12.77□□□□□ -0.37
COL28A1-203ENST00000435823 YBX2Q9Y2T7 364 aaKnown RBP12.77□□□□□ -0.37
COL28A1-203ENST00000435823 NOC2LQ9Y3T9 749 aaKnown RBP12.77□□□□□ -0.37
COL28A1-203ENST00000435823 LOXHD1Q8IVV2 1947 aa12.77□□□□□ -0.37
COL28A1-203ENST00000435823 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.76□□□□□ -0.37
COL28A1-203ENST00000435823 ZBTB39O15060 712 aa12.76□□□□□ -0.37
COL28A1-203ENST00000435823 DGAT1O75907 488 aa12.76□□□□□ -0.37
COL28A1-203ENST00000435823 RARRES1P49788 294 aa12.76□□□□□ -0.37
COL28A1-203ENST00000435823 DRP2Q13474 957 aa12.76□□□□□ -0.37
COL28A1-203ENST00000435823 PPP2R2DQ66LE6 453 aa12.76□□□□□ -0.37
COL28A1-203ENST00000435823 FAM117BQ6P1L5 589 aa12.76□□□□□ -0.37
COL28A1-203ENST00000435823 TMCO2Q7Z6W1 182 aaPredicted RBP12.76□□□□□ -0.37
COL28A1-203ENST00000435823 ZNF410Q86VK4 478 aa12.76□□□□□ -0.37
COL28A1-203ENST00000435823 RHPN2Q8IUC4 686 aa12.76□□□□□ -0.37
COL28A1-203ENST00000435823 IGSF22Q8N9C0 903 aa12.76□□□□□ -0.37
COL28A1-203ENST00000435823 PIGOQ8TEQ8 1089 aa12.76□□□□□ -0.37
COL28A1-203ENST00000435823 TMEM40Q8WWA1 233 aa12.76□□□□□ -0.37
COL28A1-203ENST00000435823 PSPC1Q8WXF1 523 aaKnown RBP12.76□□□□□ -0.37
COL28A1-203ENST00000435823 ZNF668Q96K58 619 aaPredicted RBP12.76□□□□□ -0.37
COL28A1-203ENST00000435823 RAD9AQ99638 391 aa12.76□□□□□ -0.37
COL28A1-203ENST00000435823 INO80BQ9C086 356 aaPredicted RBP12.76□□□□□ -0.37
COL28A1-203ENST00000435823 TTYH1Q9H313 450 aaPredicted RBP12.76□□□□□ -0.37
COL28A1-203ENST00000435823 ZSCAN16Q9H4T2 348 aaPredicted RBP12.76□□□□□ -0.37
COL28A1-203ENST00000435823 MTMR10Q9NXD2 777 aa12.76□□□□□ -0.37
COL28A1-203ENST00000435823 DBR1Q9UK59 544 aaKnown RBP12.76□□□□□ -0.37
COL28A1-203ENST00000435823 ST3GAL5Q9UNP4 418 aa12.76□□□□□ -0.37
COL28A1-203ENST00000435823 MTMR6Q9Y217 621 aa12.76□□□□□ -0.37
COL28A1-203ENST00000435823 ARID2Q68CP9 1835 aa12.76□□□□□ -0.37
COL28A1-203ENST00000435823 PTPRSQ13332 1948 aa12.76□□□□□ -0.37
COL28A1-203ENST00000435823 A0A087WZ62 844 aa12.75□□□□□ -0.37
COL28A1-203ENST00000435823 DENND3A2RUS2 1198 aa12.75□□□□□ -0.37
COL28A1-203ENST00000435823 ARHGEF35A5YM69 484 aa12.75□□□□□ -0.37
COL28A1-203ENST00000435823 VWA3AA6NCI4 1184 aa12.75□□□□□ -0.37
COL28A1-203ENST00000435823 RBAK-RBAKDNI3L0D1 243 aa12.75□□□□□ -0.37
COL28A1-203ENST00000435823 ENPP3O14638 875 aa12.75□□□□□ -0.37
COL28A1-203ENST00000435823 ASAP2O43150 1006 aa12.75□□□□□ -0.37
COL28A1-203ENST00000435823 UPP2O95045 317 aa12.75□□□□□ -0.37
COL28A1-203ENST00000435823 SLC34A2O95436 690 aa12.75□□□□□ -0.37
COL28A1-203ENST00000435823 CA3P07451 260 aa12.75□□□□□ -0.37
COL28A1-203ENST00000435823 DARSP14868 501 aaKnown RBP12.75□□□□□ -0.37
COL28A1-203ENST00000435823 MYOGP15173 224 aa12.75□□□□□ -0.37
COL28A1-203ENST00000435823 EIF4BP23588 611 aaKnown RBP12.75□□□□□ -0.37
COL28A1-203ENST00000435823 RESTQ13127 1097 aa12.75□□□□□ -0.37
COL28A1-203ENST00000435823 SF3A1Q15459 793 aaKnown RBP12.75□□□□□ -0.37
COL28A1-203ENST00000435823 FAM228AQ86W67 206 aa12.75□□□□□ -0.37
COL28A1-203ENST00000435823 TOP1MTQ969P6 601 aa12.75□□□□□ -0.37
COL28A1-203ENST00000435823 TMEM143Q96AN5 459 aa12.75□□□□□ -0.37
COL28A1-203ENST00000435823 NLRP4Q96MN2 994 aa12.75□□□□□ -0.37
COL28A1-203ENST00000435823 FDXACB1Q9BRP7 624 aaPredicted RBP12.75□□□□□ -0.37
COL28A1-203ENST00000435823 C1orf112Q9NSG2 853 aa12.75□□□□□ -0.37
COL28A1-203ENST00000435823 INSL6Q9Y581 213 aa12.75□□□□□ -0.37
COL28A1-203ENST00000435823 COL4A3BPQ9Y5P4 624 aa12.75□□□□□ -0.37
COL28A1-203ENST00000435823 USO1O60763 962 aaKnown RBP12.74□□□□□ -0.37
COL28A1-203ENST00000435823 STAG3L1P0CL83 205 aa12.74□□□□□ -0.37
COL28A1-203ENST00000435823 ZSCAN20P17040 1043 aaPredicted RBP12.74□□□□□ -0.37
COL28A1-203ENST00000435823 SFPQP23246 707 aaKnown RBP eCLIP12.74□□□□□ -0.37
COL28A1-203ENST00000435823 IL17AQ16552 155 aa12.74□□□□□ -0.37
COL28A1-203ENST00000435823 MCPH1Q8NEM0 835 aa12.74□□□□□ -0.37
COL28A1-203ENST00000435823 PRPF31Q8WWY3 499 aaKnown RBP12.74□□□□□ -0.37
COL28A1-203ENST00000435823 YME1L1Q96TA2 773 aa12.74□□□□□ -0.37
COL28A1-203ENST00000435823 TSPYL2Q9H2G4 693 aaPredicted RBP12.74□□□□□ -0.37
COL28A1-203ENST00000435823 TMX1Q9H3N1 280 aa12.74□□□□□ -0.37
COL28A1-203ENST00000435823 DDX19AQ9NUU7 478 aaKnown RBP12.74□□□□□ -0.37
COL28A1-203ENST00000435823 KIAA1024Q9UPX6 916 aa12.74□□□□□ -0.37
COL28A1-203ENST00000435823 LAMA2P24043 3122 aaKnown RBP12.73□□□□□ -0.37
COL28A1-203ENST00000435823 A0A087WWV3 80 aa12.73□□□□□ -0.37
COL28A1-203ENST00000435823 PP2D1A8MPX8 630 aa12.73□□□□□ -0.37
COL28A1-203ENST00000435823 HTRA4P83105 476 aaPredicted RBP12.73□□□□□ -0.37
COL28A1-203ENST00000435823 LAMTOR4Q0VGL1 99 aa12.73□□□□□ -0.37
COL28A1-203ENST00000435823 TFDP1Q14186 410 aa12.73□□□□□ -0.37
COL28A1-203ENST00000435823 MXD4Q14582 209 aaPredicted RBP12.73□□□□□ -0.37
COL28A1-203ENST00000435823 ZRSR1Q15695 479 aaKnown RBP12.73□□□□□ -0.37
COL28A1-203ENST00000435823 NPAS4Q8IUM7 802 aa12.73□□□□□ -0.37
COL28A1-203ENST00000435823 KSR1Q8IVT5 923 aa12.73□□□□□ -0.37
COL28A1-203ENST00000435823 SPRYD3Q8NCJ5 442 aa12.73□□□□□ -0.37
COL28A1-203ENST00000435823 LINC01599Q8WXQ3 324 aa12.73□□□□□ -0.37
COL28A1-203ENST00000435823 CDK5RAP3Q96JB5 506 aa12.73□□□□□ -0.37
COL28A1-203ENST00000435823 AK8Q96MA6 479 aa12.73□□□□□ -0.37
COL28A1-203ENST00000435823 GUCD1Q96NT3 240 aa12.73□□□□□ -0.37
COL28A1-203ENST00000435823 CDX2Q99626 313 aaPredicted RBP12.73□□□□□ -0.37
COL28A1-203ENST00000435823 ADAM2Q99965 735 aa12.73□□□□□ -0.37
COL28A1-203ENST00000435823 XPNPEP1Q9NQW7 623 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms