RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 SLC5A5Q92911 643 aa12.85□□□□□ -0.35
CD44-209ENST00000433892 STK33Q9BYT3 514 aa12.85□□□□□ -0.35
CD44-209ENST00000433892 NEUROG2Q9H2A3 272 aa12.85□□□□□ -0.35
CD44-209ENST00000433892 CENPHQ9H3R5 247 aa12.85□□□□□ -0.35
CD44-209ENST00000433892 QTRT2Q9H974 415 aaKnown RBP12.85□□□□□ -0.35
CD44-209ENST00000433892 AGPAT3Q9NRZ7 376 aa12.85□□□□□ -0.35
CD44-209ENST00000433892 INTUQ9ULD6 942 aa12.85□□□□□ -0.35
CD44-209ENST00000433892 ATRNL1Q5VV63 1379 aa12.84□□□□□ -0.35
CD44-209ENST00000433892 GCOM1H8Y6P7 765 aaPredicted RBP12.84□□□□□ -0.35
CD44-209ENST00000433892 BUB1BO60566 1050 aaPredicted RBP12.84□□□□□ -0.35
CD44-209ENST00000433892 CLSTN1O94985 981 aa12.84□□□□□ -0.35
CD44-209ENST00000433892 POLR2MP0CAP2 368 aa12.84□□□□□ -0.35
CD44-209ENST00000433892 NR1D1P20393 614 aa12.84□□□□□ -0.35
CD44-209ENST00000433892 HSD17B3P37058 310 aa12.84□□□□□ -0.35
CD44-209ENST00000433892 PRELPP51888 382 aa12.84□□□□□ -0.35
CD44-209ENST00000433892 CUL1Q13616 776 aa12.84□□□□□ -0.35
CD44-209ENST00000433892 PLS1Q14651 629 aa12.84□□□□□ -0.35
CD44-209ENST00000433892 KDM7AQ6ZMT4 941 aa12.84□□□□□ -0.35
CD44-209ENST00000433892 KRT27Q7Z3Y8 459 aa12.84□□□□□ -0.35
CD44-209ENST00000433892 SYCE1Q8N0S2 351 aa12.84□□□□□ -0.35
CD44-209ENST00000433892 KCTD17Q8N5Z5 321 aa12.84□□□□□ -0.35
CD44-209ENST00000433892 OR2W6PQ8NHA6 318 aa12.84□□□□□ -0.35
CD44-209ENST00000433892 SLC35G2Q8TBE7 412 aa12.84□□□□□ -0.35
CD44-209ENST00000433892 ATP6V1G3Q96LB4 118 aa12.84□□□□□ -0.35
CD44-209ENST00000433892 GPR88Q9GZN0 384 aa12.84□□□□□ -0.35
CD44-209ENST00000433892 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.84□□□□□ -0.35
CD44-209ENST00000433892 FRMD4BQ9Y2L6 1034 aa12.84□□□□□ -0.35
CD44-209ENST00000433892 IGSF9BQ9UPX0 1349 aa12.84□□□□□ -0.35
CD44-209ENST00000433892 TCP10L2B9ZVM9 353 aa12.83□□□□□ -0.35
CD44-209ENST00000433892 NDUFAB1O14561 156 aa12.83□□□□□ -0.35
CD44-209ENST00000433892 ENTPD3O75355 529 aa12.83□□□□□ -0.35
CD44-209ENST00000433892 ARP10275 920 aa12.83□□□□□ -0.35
CD44-209ENST00000433892 ARHGAP44Q17R89 818 aa12.83□□□□□ -0.35
CD44-209ENST00000433892 CEP55Q53EZ4 464 aa12.83□□□□□ -0.35
CD44-209ENST00000433892 RASGEF1CQ8N431 466 aa12.83□□□□□ -0.35
CD44-209ENST00000433892 BANK1Q8NDB2 785 aa12.83□□□□□ -0.35
CD44-209ENST00000433892 HES6Q96HZ4 224 aa12.83□□□□□ -0.35
CD44-209ENST00000433892 NACC1Q96RE7 527 aa12.83□□□□□ -0.35
CD44-209ENST00000433892 ZNF577Q9BSK1 485 aa12.83□□□□□ -0.35
CD44-209ENST00000433892 MKNK1Q9BUB5 465 aa12.83□□□□□ -0.35
CD44-209ENST00000433892 UNC45AQ9H3U1 944 aa12.83□□□□□ -0.35
CD44-209ENST00000433892 SEPT11Q9NVA2 429 aaKnown RBP12.83□□□□□ -0.35
CD44-209ENST00000433892 PPP1R9AQ9ULJ8 1098 aa12.83□□□□□ -0.35
CD44-209ENST00000433892 FAM169AQ9Y6X4 670 aa12.83□□□□□ -0.35
CD44-209ENST00000433892 FRMPD4Q14CM0 1322 aa12.83□□□□□ -0.36
CD44-209ENST00000433892 TTI1O43156 1089 aa12.83□□□□□ -0.36
CD44-209ENST00000433892 DAPK3O43293 454 aa12.83□□□□□ -0.36
CD44-209ENST00000433892 LMNB1P20700 586 aa12.83□□□□□ -0.36
CD44-209ENST00000433892 FLT3P36888 993 aa12.83□□□□□ -0.36
CD44-209ENST00000433892 ZNF131P52739 623 aa12.83□□□□□ -0.36
CD44-209ENST00000433892 NPEPPSP55786 919 aa12.83□□□□□ -0.36
CD44-209ENST00000433892 PPARDQ03181 441 aa12.83□□□□□ -0.36
CD44-209ENST00000433892 ZYXQ15942 572 aaKnown RBP12.83□□□□□ -0.36
CD44-209ENST00000433892 UAP1Q16222 522 aaPredicted RBP12.83□□□□□ -0.36
CD44-209ENST00000433892 NFIL3Q16649 462 aa12.83□□□□□ -0.36
CD44-209ENST00000433892 CC2D2BQ6DHV5 1058 aa12.83□□□□□ -0.36
CD44-209ENST00000433892 MAEAQ7L5Y9 396 aa12.83□□□□□ -0.36
CD44-209ENST00000433892 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.83□□□□□ -0.36
CD44-209ENST00000433892 CELF4Q9BZC1 486 aaKnown RBP12.83□□□□□ -0.36
CD44-209ENST00000433892 INTS2Q9H0H0 1204 aaKnown RBP12.83□□□□□ -0.36
CD44-209ENST00000433892 DMAC2Q9NW81 257 aa12.83□□□□□ -0.36
CD44-209ENST00000433892 TAS2R14Q9NYV8 317 aa12.83□□□□□ -0.36
CD44-209ENST00000433892 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.83□□□□□ -0.36
CD44-209ENST00000433892 AMFRQ9UKV5 643 aa12.83□□□□□ -0.36
CD44-209ENST00000433892 BCS1LQ9Y276 419 aa12.83□□□□□ -0.36
CD44-209ENST00000433892 ATP8B3O60423 1300 aa12.82□□□□□ -0.36
CD44-209ENST00000433892 A6NNZ2 444 aa12.82□□□□□ -0.36
CD44-209ENST00000433892 CCDC188H7C350 402 aa12.82□□□□□ -0.36
CD44-209ENST00000433892 LRRN2O75325 713 aa12.82□□□□□ -0.36
CD44-209ENST00000433892 FGGP02679 453 aa12.82□□□□□ -0.36
CD44-209ENST00000433892 LSP1P33241 339 aa12.82□□□□□ -0.36
CD44-209ENST00000433892 SF3B2Q13435 895 aaKnown RBP12.82□□□□□ -0.36
CD44-209ENST00000433892 TUBB8Q3ZCM7 444 aa12.82□□□□□ -0.36
CD44-209ENST00000433892 NAA35Q5VZE5 725 aa12.82□□□□□ -0.36
CD44-209ENST00000433892 PALB2Q86YC2 1186 aa12.82□□□□□ -0.36
CD44-209ENST00000433892 EFCAB13Q8IY85 973 aa12.82□□□□□ -0.36
CD44-209ENST00000433892 SYCP3Q8IZU3 236 aa12.82□□□□□ -0.36
CD44-209ENST00000433892 EIF1ADQ8N9N8 165 aaKnown RBP12.82□□□□□ -0.36
CD44-209ENST00000433892 PPM1EQ8WY54 764 aa12.82□□□□□ -0.36
CD44-209ENST00000433892 CTNNBL1Q8WYA6 563 aaPredicted RBP12.82□□□□□ -0.36
CD44-209ENST00000433892 RFFLQ8WZ73 363 aa12.82□□□□□ -0.36
CD44-209ENST00000433892 HOOK2Q96ED9 719 aa12.82□□□□□ -0.36
CD44-209ENST00000433892 LXNQ9BS40 222 aa12.82□□□□□ -0.36
CD44-209ENST00000433892 ARHGEF10LQ9HCE6 1279 aa12.82□□□□□ -0.36
CD44-209ENST00000433892 SEL1LQ9UBV2 794 aa12.82□□□□□ -0.36
CD44-209ENST00000433892 APEX2Q9UBZ4 518 aa12.82□□□□□ -0.36
CD44-209ENST00000433892 NR2E1Q9Y466 385 aa12.82□□□□□ -0.36
CD44-209ENST00000433892 SRCAPQ6ZRS2 3230 aa12.82□□□□□ -0.36
CD44-209ENST00000433892 CLRN2A0PK11 232 aa12.82□□□□□ -0.36
CD44-209ENST00000433892 GOLGA6L10A6NI86 522 aa12.82□□□□□ -0.36
CD44-209ENST00000433892 HMGB1P1B2RPK0 211 aaPredicted RBP12.82□□□□□ -0.36
CD44-209ENST00000433892 DDX39AO00148 427 aaKnown RBP12.82□□□□□ -0.36
CD44-209ENST00000433892 EXOC3O60645 756 aa12.82□□□□□ -0.36
CD44-209ENST00000433892 TMEM253P0C7T8 217 aa12.82□□□□□ -0.36
CD44-209ENST00000433892 HPDP32754 393 aaPredicted RBP12.82□□□□□ -0.36
CD44-209ENST00000433892 CTNNA1P35221 906 aaKnown RBP12.82□□□□□ -0.36
CD44-209ENST00000433892 MYL7Q01449 175 aa12.82□□□□□ -0.36
CD44-209ENST00000433892 PRPF4BQ13523 1007 aaKnown RBP12.82□□□□□ -0.36
CD44-209ENST00000433892 PHLDB3Q6NSJ2 640 aa12.82□□□□□ -0.36
CD44-209ENST00000433892 STXBP4Q6ZWJ1 553 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms