RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 TCRBV7S2A1N4TA0A589 114 aa13.52□□□□□ -0.24
CDH3-202ENST00000429102 FOXN3O00409 490 aaPredicted RBP13.52□□□□□ -0.24
CDH3-202ENST00000429102 SPOPO43791 374 aa13.52□□□□□ -0.24
CDH3-202ENST00000429102 SERPINB2P05120 415 aa13.52□□□□□ -0.24
CDH3-202ENST00000429102 ECHS1P30084 290 aa13.52□□□□□ -0.24
CDH3-202ENST00000429102 NF2P35240 595 aa13.52□□□□□ -0.24
CDH3-202ENST00000429102 HSPA9P38646 679 aaKnown RBP13.52□□□□□ -0.24
CDH3-202ENST00000429102 CERKLQ49MI3 558 aaPredicted RBP13.52□□□□□ -0.24
CDH3-202ENST00000429102 DENND2CQ68D51 928 aa13.52□□□□□ -0.24
CDH3-202ENST00000429102 FAM178BQ8IXR5 827 aa13.52□□□□□ -0.24
CDH3-202ENST00000429102 SLC35C1Q96A29 364 aa13.52□□□□□ -0.24
CDH3-202ENST00000429102 SKAP2O75563 359 aaPredicted RBP13.52□□□□□ -0.25
CDH3-202ENST00000429102 RPL13P26373 211 aaKnown RBP13.52□□□□□ -0.25
CDH3-202ENST00000429102 GBP2P32456 591 aaPredicted RBP13.52□□□□□ -0.25
CDH3-202ENST00000429102 CERS5Q8N5B7 392 aa13.52□□□□□ -0.25
CDH3-202ENST00000429102 ZSWIM2Q8NEG5 633 aa13.52□□□□□ -0.25
CDH3-202ENST00000429102 SLC30A5Q8TAD4 765 aa13.52□□□□□ -0.25
CDH3-202ENST00000429102 LMBR1Q8WVP7 490 aa13.52□□□□□ -0.25
CDH3-202ENST00000429102 ALG3Q92685 438 aa13.52□□□□□ -0.25
CDH3-202ENST00000429102 HVCN1Q96D96 273 aa13.52□□□□□ -0.25
CDH3-202ENST00000429102 PSMD1Q99460 953 aa13.52□□□□□ -0.25
CDH3-202ENST00000429102 HOMER2Q9NSB8 354 aa13.52□□□□□ -0.25
CDH3-202ENST00000429102 DCCP43146 1447 aa13.52□□□□□ -0.25
CDH3-202ENST00000429102 KDM3AQ9Y4C1 1321 aa13.52□□□□□ -0.25
CDH3-202ENST00000429102 CREB1P16220 341 aa13.52□□□□□ -0.25
CDH3-202ENST00000429102 SLC12A3P55017 1021 aa13.52□□□□□ -0.25
CDH3-202ENST00000429102 LONRF1Q17RB8 773 aa13.52□□□□□ -0.25
CDH3-202ENST00000429102 NT5DC3Q86UY8 548 aa13.52□□□□□ -0.25
CDH3-202ENST00000429102 PPM1KQ8N3J5 372 aa13.52□□□□□ -0.25
CDH3-202ENST00000429102 C1orf54Q8WWF1 131 aa13.52□□□□□ -0.25
CDH3-202ENST00000429102 N4BP2L2Q92802 583 aaPredicted RBP13.52□□□□□ -0.25
CDH3-202ENST00000429102 IQCDQ96DY2 449 aa13.52□□□□□ -0.25
CDH3-202ENST00000429102 PBKQ96KB5 322 aa13.52□□□□□ -0.25
CDH3-202ENST00000429102 EIF2AK1Q9BQI3 630 aaKnown RBP13.52□□□□□ -0.25
CDH3-202ENST00000429102 FTLP02792 175 aaPredicted RBP13.51□□□□□ -0.25
CDH3-202ENST00000429102 SHMT1P34896 483 aa13.51□□□□□ -0.25
CDH3-202ENST00000429102 DLG4P78352 724 aa13.51□□□□□ -0.25
CDH3-202ENST00000429102 ITIH3Q06033 890 aa13.51□□□□□ -0.25
CDH3-202ENST00000429102 HS2ST1Q7LGA3 356 aa13.51□□□□□ -0.25
CDH3-202ENST00000429102 TMC3Q7Z5M5 1100 aa13.51□□□□□ -0.25
CDH3-202ENST00000429102 TIAM2Q8IVF5 1701 aa13.51□□□□□ -0.25
CDH3-202ENST00000429102 SNED1Q8TER0 1413 aa13.51□□□□□ -0.25
CDH3-202ENST00000429102 L3MBTL1Q9Y468 752 aa13.51□□□□□ -0.25
CDH3-202ENST00000429102 PCDHA2Q9Y5H9 948 aa13.51□□□□□ -0.25
CDH3-202ENST00000429102 GOLGA6L10A0A0M3HER8 536 aa13.51□□□□□ -0.25
CDH3-202ENST00000429102 DDTLA6NHG4 134 aaPredicted RBP13.51□□□□□ -0.25
CDH3-202ENST00000429102 ICA1Q05084 483 aa13.51□□□□□ -0.25
CDH3-202ENST00000429102 PPP4R3AQ6IN85 833 aa13.51□□□□□ -0.25
CDH3-202ENST00000429102 PRUNE1Q86TP1 453 aa13.51□□□□□ -0.25
CDH3-202ENST00000429102 SCFD2Q8WU76 684 aa13.51□□□□□ -0.25
CDH3-202ENST00000429102 NCAPGQ9BPX3 1015 aa13.51□□□□□ -0.25
CDH3-202ENST00000429102 INTS9Q9NV88 658 aaKnown RBP13.51□□□□□ -0.25
CDH3-202ENST00000429102 F5H6K3 240 aa13.51□□□□□ -0.25
CDH3-202ENST00000429102 MSH4O15457 936 aa13.51□□□□□ -0.25
CDH3-202ENST00000429102 KLRC3Q07444 240 aa13.51□□□□□ -0.25
CDH3-202ENST00000429102 CDC42EP5Q6NZY7 148 aa13.51□□□□□ -0.25
CDH3-202ENST00000429102 FBXO11Q86XK2 927 aa13.51□□□□□ -0.25
CDH3-202ENST00000429102 LRRC34Q8IZ02 419 aa13.51□□□□□ -0.25
CDH3-202ENST00000429102 CEP89Q96ST8 783 aa13.51□□□□□ -0.25
CDH3-202ENST00000429102 HEMGNQ9BXL5 484 aa13.51□□□□□ -0.25
CDH3-202ENST00000429102 CXorf56Q9H5V9 222 aa13.51□□□□□ -0.25
CDH3-202ENST00000429102 USP20Q9Y2K6 914 aa13.51□□□□□ -0.25
CDH3-202ENST00000429102 FRMD4BQ9Y2L6 1034 aa13.51□□□□□ -0.25
CDH3-202ENST00000429102 F8VZ95 297 aa13.5□□□□□ -0.25
CDH3-202ENST00000429102 SPATA31C1P0DKV0 1188 aa13.5□□□□□ -0.25
CDH3-202ENST00000429102 FNTAP49354 379 aa13.5□□□□□ -0.25
CDH3-202ENST00000429102 MAP2K1Q02750 393 aaPredicted RBP13.5□□□□□ -0.25
CDH3-202ENST00000429102 PPP1R18Q6NYC8 613 aa13.5□□□□□ -0.25
CDH3-202ENST00000429102 SLF2Q8IX21 1173 aa13.5□□□□□ -0.25
CDH3-202ENST00000429102 LRRC57Q8N9N7 239 aa13.5□□□□□ -0.25
CDH3-202ENST00000429102 ZKSCAN4Q969J2 545 aaPredicted RBP13.5□□□□□ -0.25
CDH3-202ENST00000429102 SLC24A3Q9HC58 644 aa13.5□□□□□ -0.25
CDH3-202ENST00000429102 ALG6Q9Y672 507 aa13.5□□□□□ -0.25
CDH3-202ENST00000429102 PMS2P54278 862 aa13.5□□□□□ -0.25
CDH3-202ENST00000429102 CUL1Q13616 776 aa13.5□□□□□ -0.25
CDH3-202ENST00000429102 EPHA7Q15375 998 aa13.5□□□□□ -0.25
CDH3-202ENST00000429102 PRPF38AQ8NAV1 312 aaKnown RBP13.5□□□□□ -0.25
CDH3-202ENST00000429102 ATG4AQ8WYN0 398 aa13.5□□□□□ -0.25
CDH3-202ENST00000429102 CTNNAL1Q9UBT7 734 aa13.5□□□□□ -0.25
CDH3-202ENST00000429102 ODF2LQ9ULJ1 636 aa13.5□□□□□ -0.25
CDH3-202ENST00000429102 RBAK-RBAKDNI3L0D1 243 aa13.5□□□□□ -0.25
CDH3-202ENST00000429102 DCAF12L1Q5VU92 463 aa13.5□□□□□ -0.25
CDH3-202ENST00000429102 LLGL2Q6P1M3 1020 aa13.5□□□□□ -0.25
CDH3-202ENST00000429102 CYB5D1Q6P9G0 228 aa13.5□□□□□ -0.25
CDH3-202ENST00000429102 SPIRE2Q8WWL2 714 aa13.5□□□□□ -0.25
CDH3-202ENST00000429102 ASIC3Q9UHC3 531 aa13.5□□□□□ -0.25
CDH3-202ENST00000429102 PIAS1O75925 651 aa13.49□□□□□ -0.25
CDH3-202ENST00000429102 UPP2O95045 317 aa13.49□□□□□ -0.25
CDH3-202ENST00000429102 GH2P01242 217 aa13.49□□□□□ -0.25
CDH3-202ENST00000429102 SCP2P22307 547 aa13.49□□□□□ -0.25
CDH3-202ENST00000429102 SCTRP47872 440 aa13.49□□□□□ -0.25
CDH3-202ENST00000429102 SNCBQ16143 134 aa13.49□□□□□ -0.25
CDH3-202ENST00000429102 LRCH2Q5VUJ6 765 aa13.49□□□□□ -0.25
CDH3-202ENST00000429102 CNPY4Q8N129 248 aa13.49□□□□□ -0.25
CDH3-202ENST00000429102 EDEM3Q9BZQ6 932 aa13.49□□□□□ -0.25
CDH3-202ENST00000429102 COG5Q9UP83 839 aa13.49□□□□□ -0.25
CDH3-202ENST00000429102 ASTN1O14525 1302 aa13.49□□□□□ -0.25
CDH3-202ENST00000429102 STRCP1A6NGW2 1772 aa13.49□□□□□ -0.25
CDH3-202ENST00000429102 GSTTP1A0A1W2PQM5 241 aa13.49□□□□□ -0.25
CDH3-202ENST00000429102 ESYT2A0FGR8 921 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms