RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 DCDC2CA8MYV0 355 aa11.17□□□□□ -0.62
CD44-207ENST00000425428 ARVCFO00192 962 aa11.17□□□□□ -0.62
CD44-207ENST00000425428 HIP1RO75146 1068 aa11.17□□□□□ -0.62
CD44-207ENST00000425428 CCDC192P0DO97 292 aa11.17□□□□□ -0.62
CD44-207ENST00000425428 NCBP1Q09161 790 aaKnown RBP11.17□□□□□ -0.62
CD44-207ENST00000425428 CUL4BQ13620 913 aa11.17□□□□□ -0.62
CD44-207ENST00000425428 ALCAMQ13740 583 aa11.17□□□□□ -0.62
CD44-207ENST00000425428 TARBP2Q15633 366 aaKnown RBP11.17□□□□□ -0.62
CD44-207ENST00000425428 PTGISQ16647 500 aa11.17□□□□□ -0.62
CD44-207ENST00000425428 ODR4Q5SWX8 454 aa11.17□□□□□ -0.62
CD44-207ENST00000425428 L1TD1Q5T7N2 865 aaKnown RBP11.17□□□□□ -0.62
CD44-207ENST00000425428 SESTD1Q86VW0 696 aa11.17□□□□□ -0.62
CD44-207ENST00000425428 ZBTB8OSQ8IWT0 167 aa11.17□□□□□ -0.62
CD44-207ENST00000425428 FAM178BQ8IXR5 827 aa11.17□□□□□ -0.62
CD44-207ENST00000425428 GRAMD1CQ8IYS0 662 aa11.17□□□□□ -0.62
CD44-207ENST00000425428 DEPTORQ8TB45 409 aa11.17□□□□□ -0.62
CD44-207ENST00000425428 LMBR1Q8WVP7 490 aa11.17□□□□□ -0.62
CD44-207ENST00000425428 SH2D3AQ9BRG2 576 aa11.17□□□□□ -0.62
CD44-207ENST00000425428 REEP2Q9BRK0 252 aa11.17□□□□□ -0.62
CD44-207ENST00000425428 RUSC1Q9BVN2 902 aa11.17□□□□□ -0.62
CD44-207ENST00000425428 NAT10Q9H0A0 1025 aaKnown RBP11.17□□□□□ -0.62
CD44-207ENST00000425428 C11orf49Q9H6J7 331 aa11.17□□□□□ -0.62
CD44-207ENST00000425428 MRPL44Q9H9J2 332 aaKnown RBP11.17□□□□□ -0.62
CD44-207ENST00000425428 SUCLA2Q9P2R7 463 aaPredicted RBP11.17□□□□□ -0.62
CD44-207ENST00000425428 PCDHA2Q9Y5H9 948 aa11.17□□□□□ -0.62
CD44-207ENST00000425428 SMIM35A0A1B0GVV1 85 aa11.16□□□□□ -0.62
CD44-207ENST00000425428 TMEM150BA6NC51 233 aa11.16□□□□□ -0.62
CD44-207ENST00000425428 RTP1P59025 263 aa11.16□□□□□ -0.62
CD44-207ENST00000425428 DPYDQ12882 1025 aa11.16□□□□□ -0.62
CD44-207ENST00000425428 GIT2Q14161 759 aa11.16□□□□□ -0.62
CD44-207ENST00000425428 KCNB1Q14721 858 aa11.16□□□□□ -0.62
CD44-207ENST00000425428 SH3RF1Q7Z6J0 888 aa11.16□□□□□ -0.62
CD44-207ENST00000425428 INO80BQ9C086 356 aaPredicted RBP11.16□□□□□ -0.62
CD44-207ENST00000425428 POLR3FQ9H1D9 316 aaPredicted RBP11.16□□□□□ -0.62
CD44-207ENST00000425428 C2orf40Q9H1Z8 148 aa11.16□□□□□ -0.62
CD44-207ENST00000425428 KMT5AQ9NQR1 393 aa11.16□□□□□ -0.62
CD44-207ENST00000425428 PCDHB13Q9Y5F0 798 aa11.16□□□□□ -0.62
CD44-207ENST00000425428 PCDHA5Q9Y5H7 936 aa11.16□□□□□ -0.62
CD44-207ENST00000425428 LRRIQ4A6NIV6 560 aa11.16□□□□□ -0.62
CD44-207ENST00000425428 STBD1O95210 358 aa11.16□□□□□ -0.62
CD44-207ENST00000425428 PLS3P13797 630 aa11.16□□□□□ -0.62
CD44-207ENST00000425428 IRX5P78411 483 aaPredicted RBP11.16□□□□□ -0.62
CD44-207ENST00000425428 STRN3Q13033 797 aa11.16□□□□□ -0.62
CD44-207ENST00000425428 TMEM132AQ24JP5 1023 aa11.16□□□□□ -0.62
CD44-207ENST00000425428 RHPN2Q8IUC4 686 aa11.16□□□□□ -0.62
CD44-207ENST00000425428 TRAPPC12Q8WVT3 735 aa11.16□□□□□ -0.62
CD44-207ENST00000425428 NLRP7Q8WX94 980 aa11.16□□□□□ -0.62
CD44-207ENST00000425428 TMEM143Q96AN5 459 aa11.16□□□□□ -0.62
CD44-207ENST00000425428 FAM49AQ9H0Q0 323 aaPredicted RBP11.16□□□□□ -0.62
CD44-207ENST00000425428 ANO10Q9NW15 660 aa11.16□□□□□ -0.62
CD44-207ENST00000425428 RNF216Q9NWF9 866 aaPredicted RBP11.16□□□□□ -0.62
CD44-207ENST00000425428 EXOC7Q9UPT5 735 aa11.16□□□□□ -0.62
CD44-207ENST00000425428 C22orf31O95567 290 aa11.15□□□□□ -0.62
CD44-207ENST00000425428 MAPTP10636 758 aaKnown RBP11.15□□□□□ -0.62
CD44-207ENST00000425428 NAMPTP43490 491 aa11.15□□□□□ -0.62
CD44-207ENST00000425428 PHKA2P46019 1235 aa11.15□□□□□ -0.62
CD44-207ENST00000425428 EFNA5P52803 228 aa11.15□□□□□ -0.62
CD44-207ENST00000425428 PEX3P56589 373 aa11.15□□□□□ -0.62
CD44-207ENST00000425428 BFSP2Q13515 415 aa11.15□□□□□ -0.62
CD44-207ENST00000425428 HSP90AA2PQ14568 343 aaPredicted RBP11.15□□□□□ -0.62
CD44-207ENST00000425428 KMT5BQ4FZB7 885 aa11.15□□□□□ -0.62
CD44-207ENST00000425428 ARSHQ5FYA8 562 aa11.15□□□□□ -0.62
CD44-207ENST00000425428 FAM26FQ5R3K3 315 aa11.15□□□□□ -0.62
CD44-207ENST00000425428 LRRC71Q8N4P6 559 aa11.15□□□□□ -0.62
CD44-207ENST00000425428 GZF1Q9H116 711 aaPredicted RBP11.15□□□□□ -0.62
CD44-207ENST00000425428 TMEM63CQ9P1W3 806 aa11.15□□□□□ -0.62
CD44-207ENST00000425428 NPHP3-ACAD11A0A0J9YXS1 232 aa11.14□□□□□ -0.63
CD44-207ENST00000425428 MBLAC1A4D2B0 266 aaPredicted RBP11.14□□□□□ -0.63
CD44-207ENST00000425428 K7ENM7 598 aa11.14□□□□□ -0.63
CD44-207ENST00000425428 TREHO43280 583 aa11.14□□□□□ -0.63
CD44-207ENST00000425428 CAND2O75155 1236 aa11.14□□□□□ -0.63
CD44-207ENST00000425428 RHOBTB3O94955 611 aa11.14□□□□□ -0.63
CD44-207ENST00000425428 GCNT3O95395 438 aa11.14□□□□□ -0.63
CD44-207ENST00000425428 CAVIN2O95810 425 aa11.14□□□□□ -0.63
CD44-207ENST00000425428 SRGAP2CP0DJJ0 459 aa11.14□□□□□ -0.63
CD44-207ENST00000425428 CLCN3P51790 818 aa11.14□□□□□ -0.63
CD44-207ENST00000425428 MDM2Q00987 491 aaPredicted RBP11.14□□□□□ -0.63
CD44-207ENST00000425428 COASYQ13057 564 aa11.14□□□□□ -0.63
CD44-207ENST00000425428 PTK7Q13308 1070 aa11.14□□□□□ -0.63
CD44-207ENST00000425428 STX1AQ16623 288 aa11.14□□□□□ -0.63
CD44-207ENST00000425428 ZNF658Q5TYW1 1059 aaPredicted RBP11.14□□□□□ -0.63
CD44-207ENST00000425428 SLC39A5Q6ZMH5 540 aa11.14□□□□□ -0.63
CD44-207ENST00000425428 APBB1IPQ7Z5R6 666 aaPredicted RBP11.14□□□□□ -0.63
CD44-207ENST00000425428 ZNF410Q86VK4 478 aa11.14□□□□□ -0.63
CD44-207ENST00000425428 SYCP3Q8IZU3 236 aa11.14□□□□□ -0.63
CD44-207ENST00000425428 PRPF31Q8WWY3 499 aaKnown RBP11.14□□□□□ -0.63
CD44-207ENST00000425428 DNAJC19Q96DA6 116 aa11.14□□□□□ -0.63
CD44-207ENST00000425428 NLRP4Q96MN2 994 aa11.14□□□□□ -0.63
CD44-207ENST00000425428 GCOM2Q9BZD3 368 aaPredicted RBP11.14□□□□□ -0.63
CD44-207ENST00000425428 OLFML3Q9NRN5 406 aa11.14□□□□□ -0.63
CD44-207ENST00000425428 PRKAG2Q9UGJ0 569 aa11.14□□□□□ -0.63
CD44-207ENST00000425428 IGKV6-21A0A0C4DH24 114 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 SYCE3A1L190 88 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 SFI1A8K8P3 1242 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 K7ERI5 159 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 BIN1O00499 593 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 PSMA7O14818 248 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 PRR29P0C7W0 189 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 ATN1P54259 1190 aaPredicted RBP11.13□□□□□ -0.63
CD44-207ENST00000425428 C1QBPQ07021 282 aaKnown RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms