RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 FYB2Q5VWT5 728 aa3.65□□□□□ -1.82
SYNE1-212ENST00000423061 MRPL1Q9BYD6 325 aaKnown RBP3.65□□□□□ -1.82
SYNE1-212ENST00000423061 FAM129AQ9BZQ8 928 aa3.65□□□□□ -1.82
SYNE1-212ENST00000423061 NCALDP61601 193 aa3.65□□□□□ -1.82
SYNE1-212ENST00000423061 TRIP13Q15645 432 aaPredicted RBP3.65□□□□□ -1.82
SYNE1-212ENST00000423061 CRNKL1Q9BZJ0 848 aaKnown RBP3.65□□□□□ -1.82
SYNE1-212ENST00000423061 ATP6V0A2Q9Y487 856 aa3.65□□□□□ -1.82
SYNE1-212ENST00000423061 MXI1P50539 228 aa3.65□□□□□ -1.82
SYNE1-212ENST00000423061 LLGL1Q15334 1064 aa3.65□□□□□ -1.82
SYNE1-212ENST00000423061 PLA2G4EQ3MJ16 856 aa3.65□□□□□ -1.82
SYNE1-212ENST00000423061 MCM10Q7L590 875 aa3.65□□□□□ -1.82
SYNE1-212ENST00000423061 OXCT2Q9BYC2 517 aaPredicted RBP3.65□□□□□ -1.82
SYNE1-212ENST00000423061 ZHX3Q9H4I2 956 aa3.65□□□□□ -1.82
SYNE1-212ENST00000423061 KRT82Q9NSB4 513 aa3.65□□□□□ -1.82
SYNE1-212ENST00000423061 CCT6BQ92526 530 aa3.65□□□□□ -1.82
SYNE1-212ENST00000423061 ZBTB1Q9Y2K1 713 aa3.65□□□□□ -1.82
SYNE1-212ENST00000423061 LRRC42Q9Y546 428 aa3.65□□□□□ -1.82
SYNE1-212ENST00000423061 KIF20BQ96Q89 1820 aa3.65□□□□□ -1.82
SYNE1-212ENST00000423061 NR4A1P22736 598 aa3.65□□□□□ -1.82
SYNE1-212ENST00000423061 HSPA9P38646 679 aaKnown RBP3.65□□□□□ -1.82
SYNE1-212ENST00000423061 USH1GQ495M9 461 aa3.65□□□□□ -1.82
SYNE1-212ENST00000423061 KLHL35Q6PF15 583 aa3.65□□□□□ -1.82
SYNE1-212ENST00000423061 EHD1Q9H4M9 534 aa3.65□□□□□ -1.82
SYNE1-212ENST00000423061 HAO1Q9UJM8 370 aa3.65□□□□□ -1.82
SYNE1-212ENST00000423061 RIPK1Q13546 671 aa3.65□□□□□ -1.82
SYNE1-212ENST00000423061 MKL1Q969V6 931 aa3.65□□□□□ -1.82
SYNE1-212ENST00000423061 TMEM60Q9H2L4 133 aa3.65□□□□□ -1.82
SYNE1-212ENST00000423061 CBX6O95503 412 aa3.65□□□□□ -1.82
SYNE1-212ENST00000423061 CSE1LP55060 971 aaKnown RBP3.65□□□□□ -1.82
SYNE1-212ENST00000423061 KRT31Q15323 416 aa3.65□□□□□ -1.82
SYNE1-212ENST00000423061 GJC1P36383 396 aa3.65□□□□□ -1.82
SYNE1-212ENST00000423061 CERKLQ49MI3 558 aaPredicted RBP3.65□□□□□ -1.82
SYNE1-212ENST00000423061 KCNJ18B7U540 433 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 IDH1O75874 414 aaKnown RBP3.65□□□□□ -1.83
SYNE1-212ENST00000423061 GYS1P13807 737 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 KCNJ6P48051 423 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 CASP5P51878 434 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 NKX2-5P52952 324 aaPredicted RBP3.65□□□□□ -1.83
SYNE1-212ENST00000423061 KCNJ12Q14500 433 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 CNNM1Q9NRU3 951 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 MCM9Q9NXL9 1143 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 CLEC11AQ9Y240 323 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 CCDC194A0A1B0GVG4 234 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 PSMA7O14818 248 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 CHMP2AO43633 222 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 OXCT1P55809 520 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 RRS1Q15050 365 aaKnown RBP3.65□□□□□ -1.83
SYNE1-212ENST00000423061 SNAP47Q5SQN1 464 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 WNK4Q96J92 1243 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 HEPHQ9BQS7 1158 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP3.65□□□□□ -1.83
SYNE1-212ENST00000423061 IL1RAPL1Q9NZN1 696 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 NDUFA10O95299 355 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 CYP1A1P04798 512 aaPredicted RBP3.65□□□□□ -1.83
SYNE1-212ENST00000423061 DTX3Q8N9I9 347 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 ASAP3Q8TDY4 903 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 PYROXD1Q8WU10 500 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 MMGT1Q8N4V1 131 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 STAMQ92783 540 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 GABBR1Q9UBS5 961 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 COPB1P53618 953 aaKnown RBP3.65□□□□□ -1.83
SYNE1-212ENST00000423061 MAPK10P53779 464 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 ESRRGP62508 458 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 GOLM1Q8NBJ4 401 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 LRWD1Q9UFC0 647 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 PPME1Q9Y570 386 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 CHN2P52757 468 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 AMPD3Q01432 767 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 SULT1C3Q6IMI6 304 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 LPCAT2Q7L5N7 544 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 PPP1R42Q7Z4L9 355 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 CATSPER3Q86XQ3 398 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 TRPV5Q9NQA5 729 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 CABP1Q9NZU7 370 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 SNPHO15079 494 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 MARCH10Q8NA82 808 aaPredicted RBP3.65□□□□□ -1.83
SYNE1-212ENST00000423061 CCDC8Q9H0W5 538 aaPredicted RBP3.65□□□□□ -1.83
SYNE1-212ENST00000423061 CNOT8Q9UFF9 292 aaKnown RBP3.65□□□□□ -1.83
SYNE1-212ENST00000423061 ANGPTL3Q9Y5C1 460 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 A0A1W2PQ27 194 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 A0A1W2PQ64 194 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 A0A1W2PQD8 194 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 IKBKBO14920 756 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 ZC2HC1CQ53FD0 456 aaPredicted RBP3.65□□□□□ -1.83
SYNE1-212ENST00000423061 SMYD1Q8NB12 490 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 SPOCK2Q92563 424 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 GRIP2Q9C0E4 1043 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 PPARGC1AQ9UBK2 798 aaKnown RBP3.65□□□□□ -1.83
SYNE1-212ENST00000423061 TLK1Q9UKI8 766 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 MAP3K4Q9Y6R4 1608 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 PDCD4Q53EL6 469 aaKnown RBP3.65□□□□□ -1.83
SYNE1-212ENST00000423061 WASHC2DQ5SRD0 308 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 TRIML2Q8N7C3 387 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 PTPRN2Q92932 1015 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 MAK16Q9BXY0 300 aaKnown RBP3.65□□□□□ -1.83
SYNE1-212ENST00000423061 RAB34Q9BZG1 259 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 ABCA6Q8N139 1617 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 KRT13P13646 458 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 TUBA3EQ6PEY2 450 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 ALG1Q9BT22 464 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms