RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 EIF3DO15371 548 aaKnown RBP eCLIP18.9■□□□□ 0.62
CCDC28B-202ENST00000421922 KPNA6O60684 536 aa18.9■□□□□ 0.62
CCDC28B-202ENST00000421922 MAPTP10636 758 aaKnown RBP18.9■□□□□ 0.62
CCDC28B-202ENST00000421922 CDK11BP21127 795 aaKnown RBP18.9■□□□□ 0.62
CCDC28B-202ENST00000421922 PEX3P56589 373 aa18.9■□□□□ 0.62
CCDC28B-202ENST00000421922 PPP2R5AQ15172 486 aa18.9■□□□□ 0.62
CCDC28B-202ENST00000421922 TARBP2Q15633 366 aaKnown RBP18.9■□□□□ 0.62
CCDC28B-202ENST00000421922 NELFCDQ8IXH7 590 aa18.9■□□□□ 0.62
CCDC28B-202ENST00000421922 RETREG2Q8NC44 543 aa18.9■□□□□ 0.62
CCDC28B-202ENST00000421922 ANKRD20A12PQ8NF67 263 aa18.9■□□□□ 0.62
CCDC28B-202ENST00000421922 GPRC5CQ9NQ84 441 aa18.9■□□□□ 0.62
CCDC28B-202ENST00000421922 PCDHA2Q9Y5H9 948 aa18.9■□□□□ 0.62
CCDC28B-202ENST00000421922 H0YCG3 227 aa18.89■□□□□ 0.61
CCDC28B-202ENST00000421922 FGFR1OPO95684 399 aaKnown RBP18.89■□□□□ 0.61
CCDC28B-202ENST00000421922 MYBP10242 640 aa18.89■□□□□ 0.61
CCDC28B-202ENST00000421922 NMT1P30419 496 aaKnown RBP18.89■□□□□ 0.61
CCDC28B-202ENST00000421922 GRK4P32298 578 aa18.89■□□□□ 0.61
CCDC28B-202ENST00000421922 DNM2P50570 870 aa18.89■□□□□ 0.61
CCDC28B-202ENST00000421922 RTP1P59025 263 aa18.89■□□□□ 0.61
CCDC28B-202ENST00000421922 IGBP1P78318 339 aa18.89■□□□□ 0.61
CCDC28B-202ENST00000421922 BEX3Q00994 111 aa18.89■□□□□ 0.61
CCDC28B-202ENST00000421922 LRRC63Q05C16 580 aa18.89■□□□□ 0.61
CCDC28B-202ENST00000421922 PPFIA1Q13136 1202 aa18.89■□□□□ 0.61
CCDC28B-202ENST00000421922 DAW1Q8N136 415 aa18.89■□□□□ 0.61
CCDC28B-202ENST00000421922 C16orf70Q9BSU1 422 aa18.89■□□□□ 0.61
CCDC28B-202ENST00000421922 XPNPEP3Q9NQH7 507 aa18.89■□□□□ 0.61
CCDC28B-202ENST00000421922 KMT5AQ9NQR1 393 aa18.89■□□□□ 0.61
CCDC28B-202ENST00000421922 MAFO75444 373 aaPredicted RBP18.88■□□□□ 0.61
CCDC28B-202ENST00000421922 MYCNP04198 464 aaPredicted RBP18.88■□□□□ 0.61
CCDC28B-202ENST00000421922 INHAP05111 366 aa18.88■□□□□ 0.61
CCDC28B-202ENST00000421922 CCND3P30281 292 aaPredicted RBP18.88■□□□□ 0.61
CCDC28B-202ENST00000421922 ABCD1P33897 745 aa18.88■□□□□ 0.61
CCDC28B-202ENST00000421922 GJA9P57773 515 aa18.88■□□□□ 0.61
CCDC28B-202ENST00000421922 NOC3LQ8WTT2 800 aaKnown RBP18.88■□□□□ 0.61
CCDC28B-202ENST00000421922 TMEM143Q96AN5 459 aa18.88■□□□□ 0.61
CCDC28B-202ENST00000421922 RNPEPQ9H4A4 650 aa18.88■□□□□ 0.61
CCDC28B-202ENST00000421922 SUGCTQ9HAC7 445 aa18.88■□□□□ 0.61
CCDC28B-202ENST00000421922 XPNPEP1Q9NQW7 623 aa18.88■□□□□ 0.61
CCDC28B-202ENST00000421922 MAGEC2Q9UBF1 373 aaPredicted RBP18.88■□□□□ 0.61
CCDC28B-202ENST00000421922 TRIM49BA6NDI0 452 aa18.87■□□□□ 0.61
CCDC28B-202ENST00000421922 MAGEB2O15479 319 aa18.87■□□□□ 0.61
CCDC28B-202ENST00000421922 PRPF6O94906 941 aaKnown RBP18.87■□□□□ 0.61
CCDC28B-202ENST00000421922 F2P00734 622 aa18.87■□□□□ 0.61
CCDC28B-202ENST00000421922 INSRRP14616 1297 aa18.87■□□□□ 0.61
CCDC28B-202ENST00000421922 MFSD10Q14728 455 aa18.87■□□□□ 0.61
CCDC28B-202ENST00000421922 NCAPHQ15003 741 aa18.87■□□□□ 0.61
CCDC28B-202ENST00000421922 GNASQ5JWF2 1037 aa18.87■□□□□ 0.61
CCDC28B-202ENST00000421922 IER5Q5VY09 327 aa18.87■□□□□ 0.61
CCDC28B-202ENST00000421922 CENPPQ6IPU0 288 aa18.87■□□□□ 0.61
CCDC28B-202ENST00000421922 FAM114A1Q8IWE2 563 aa18.87■□□□□ 0.61
CCDC28B-202ENST00000421922 SYCP3Q8IZU3 236 aa18.87■□□□□ 0.61
CCDC28B-202ENST00000421922 CSGALNACT2Q8N6G5 542 aa18.87■□□□□ 0.61
CCDC28B-202ENST00000421922 GLIS3Q8NEA6 775 aa18.87■□□□□ 0.61
CCDC28B-202ENST00000421922 SCFD1Q8WVM8 642 aa18.87■□□□□ 0.61
CCDC28B-202ENST00000421922 PSPC1Q8WXF1 523 aaKnown RBP18.87■□□□□ 0.61
CCDC28B-202ENST00000421922 UPF3AQ9H1J1 476 aaKnown RBP18.87■□□□□ 0.61
CCDC28B-202ENST00000421922 FANCLQ9NW38 375 aa18.87■□□□□ 0.61
CCDC28B-202ENST00000421922 PTCH2Q9Y6C5 1203 aa18.87■□□□□ 0.61
CCDC28B-202ENST00000421922 RRN3P2A6NIE6 340 aa18.86■□□□□ 0.61
CCDC28B-202ENST00000421922 SLC16A4O15374 487 aa18.86■□□□□ 0.61
CCDC28B-202ENST00000421922 CALUO43852 315 aaPredicted RBP18.86■□□□□ 0.61
CCDC28B-202ENST00000421922 MSCO60682 206 aa18.86■□□□□ 0.61
CCDC28B-202ENST00000421922 TMOD1P28289 359 aa18.86■□□□□ 0.61
CCDC28B-202ENST00000421922 PSEN2P49810 448 aa18.86■□□□□ 0.61
CCDC28B-202ENST00000421922 CASP5P51878 434 aa18.86■□□□□ 0.61
CCDC28B-202ENST00000421922 SOX10P56693 466 aa18.86■□□□□ 0.61
CCDC28B-202ENST00000421922 SPAG1Q07617 926 aa18.86■□□□□ 0.61
CCDC28B-202ENST00000421922 GRIK4Q16099 956 aa18.86■□□□□ 0.61
CCDC28B-202ENST00000421922 KNOP1Q1ED39 458 aaKnown RBP18.86■□□□□ 0.61
CCDC28B-202ENST00000421922 BMT2Q1RMZ1 405 aa18.86■□□□□ 0.61
CCDC28B-202ENST00000421922 KIAA0753Q2KHM9 967 aa18.86■□□□□ 0.61
CCDC28B-202ENST00000421922 PPP4R3CPQ6ZMV5 832 aa18.86■□□□□ 0.61
CCDC28B-202ENST00000421922 EPM2AIP1Q7L775 607 aaPredicted RBP18.86■□□□□ 0.61
CCDC28B-202ENST00000421922 ZNF720Q7Z2F6 126 aa18.86■□□□□ 0.61
CCDC28B-202ENST00000421922 METTL13Q8N6R0 699 aa18.86■□□□□ 0.61
CCDC28B-202ENST00000421922 TRAPPC12Q8WVT3 735 aa18.86■□□□□ 0.61
CCDC28B-202ENST00000421922 SPIRE2Q8WWL2 714 aa18.86■□□□□ 0.61
CCDC28B-202ENST00000421922 ACCSQ96QU6 501 aa18.86■□□□□ 0.61
CCDC28B-202ENST00000421922 FGFBP2Q9BYJ0 223 aa18.86■□□□□ 0.61
CCDC28B-202ENST00000421922 TRIM5Q9C035 493 aa18.86■□□□□ 0.61
CCDC28B-202ENST00000421922 HMX1Q9NP08 348 aaPredicted RBP18.86■□□□□ 0.61
CCDC28B-202ENST00000421922 PDLIM7Q9NR12 457 aa18.86■□□□□ 0.61
CCDC28B-202ENST00000421922 DDX20Q9UHI6 824 aaKnown RBP18.86■□□□□ 0.61
CCDC28B-202ENST00000421922 EXOC7Q9UPT5 735 aa18.86■□□□□ 0.61
CCDC28B-202ENST00000421922 LRRIQ4A6NIV6 560 aa18.85■□□□□ 0.61
CCDC28B-202ENST00000421922 PGK1P00558 417 aa18.85■□□□□ 0.61
CCDC28B-202ENST00000421922 SERPINC1P01008 464 aa18.85■□□□□ 0.61
CCDC28B-202ENST00000421922 SCP2P22307 547 aa18.85■□□□□ 0.61
CCDC28B-202ENST00000421922 NPTX2P47972 431 aa18.85■□□□□ 0.61
CCDC28B-202ENST00000421922 NCKAP1LP55160 1127 aa18.85■□□□□ 0.61
CCDC28B-202ENST00000421922 MAP3K21Q5TCX8 1036 aa18.85■□□□□ 0.61
CCDC28B-202ENST00000421922 ANKRD40Q6AI12 368 aa18.85■□□□□ 0.61
CCDC28B-202ENST00000421922 HS2ST1Q7LGA3 356 aa18.85■□□□□ 0.61
CCDC28B-202ENST00000421922 HAUS6Q7Z4H7 955 aa18.85■□□□□ 0.61
CCDC28B-202ENST00000421922 CREBRFQ8IUR6 639 aa18.85■□□□□ 0.61
CCDC28B-202ENST00000421922 DEPTORQ8TB45 409 aa18.85■□□□□ 0.61
CCDC28B-202ENST00000421922 ZNF507Q8TCN5 953 aa18.85■□□□□ 0.61
CCDC28B-202ENST00000421922 HVCN1Q96D96 273 aa18.85■□□□□ 0.61
CCDC28B-202ENST00000421922 CEP89Q96ST8 783 aa18.85■□□□□ 0.61
CCDC28B-202ENST00000421922 MTG1Q9BT17 334 aaPredicted RBP18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms