RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 TMEM173Q86WV6 379 aaPredicted RBP9.17□□□□□ -0.94
VIM-202ENST00000421459 SUGP1Q8IWZ8 645 aaKnown RBP9.17□□□□□ -0.94
VIM-202ENST00000421459 ZNF713Q8N859 430 aaPredicted RBP9.17□□□□□ -0.94
VIM-202ENST00000421459 BRF1Q92994 677 aa9.17□□□□□ -0.94
VIM-202ENST00000421459 LPPQ93052 612 aa9.17□□□□□ -0.94
VIM-202ENST00000421459 ZNF558Q96NG5 402 aa9.17□□□□□ -0.94
VIM-202ENST00000421459 ZMYND12Q9H0C1 365 aa9.17□□□□□ -0.94
VIM-202ENST00000421459 UNC45AQ9H3U1 944 aa9.17□□□□□ -0.94
VIM-202ENST00000421459 POMKQ9H5K3 350 aa9.17□□□□□ -0.94
VIM-202ENST00000421459 ELAC1Q9H777 363 aaKnown RBP9.17□□□□□ -0.94
VIM-202ENST00000421459 C6orf50Q9HD87 102 aa9.17□□□□□ -0.94
VIM-202ENST00000421459 TBC1D22BQ9NU19 505 aa9.17□□□□□ -0.94
VIM-202ENST00000421459 VPS54Q9P1Q0 977 aa9.17□□□□□ -0.94
VIM-202ENST00000421459 TECTAO75443 2155 aa9.16□□□□□ -0.94
VIM-202ENST00000421459 KAT6AQ92794 2004 aa9.16□□□□□ -0.94
VIM-202ENST00000421459 C2orf71A6NGG8 1288 aa9.16□□□□□ -0.94
VIM-202ENST00000421459 MEIS3P2A8K0S8 358 aa9.16□□□□□ -0.94
VIM-202ENST00000421459 C2CD4DB7Z1M9 353 aa9.16□□□□□ -0.94
VIM-202ENST00000421459 H0Y858 1186 aa9.16□□□□□ -0.94
VIM-202ENST00000421459 PRPF3O43395 683 aaKnown RBP9.16□□□□□ -0.94
VIM-202ENST00000421459 DTNBO60941 627 aa9.16□□□□□ -0.94
VIM-202ENST00000421459 CLASP2O75122 1294 aaKnown RBP9.16□□□□□ -0.94
VIM-202ENST00000421459 OATP04181 439 aa9.16□□□□□ -0.94
VIM-202ENST00000421459 ASGR2P07307 311 aa9.16□□□□□ -0.94
VIM-202ENST00000421459 DARSP14868 501 aaKnown RBP9.16□□□□□ -0.94
VIM-202ENST00000421459 ZSCAN20P17040 1043 aaPredicted RBP9.16□□□□□ -0.94
VIM-202ENST00000421459 EIF4BP23588 611 aaKnown RBP9.16□□□□□ -0.94
VIM-202ENST00000421459 AVPR2P30518 371 aa9.16□□□□□ -0.94
VIM-202ENST00000421459 GPC3P51654 580 aa9.16□□□□□ -0.94
VIM-202ENST00000421459 PTPN5P54829 565 aa9.16□□□□□ -0.94
VIM-202ENST00000421459 CCT2P78371 535 aaKnown RBP9.16□□□□□ -0.94
VIM-202ENST00000421459 FGD1P98174 961 aa9.16□□□□□ -0.94
VIM-202ENST00000421459 PRKCEQ02156 737 aa9.16□□□□□ -0.94
VIM-202ENST00000421459 PTPN21Q16825 1174 aa9.16□□□□□ -0.94
VIM-202ENST00000421459 TSGA10IPQ3SY00 556 aa9.16□□□□□ -0.94
VIM-202ENST00000421459 ODR4Q5SWX8 454 aa9.16□□□□□ -0.94
VIM-202ENST00000421459 ZNF598Q86UK7 904 aaKnown RBP9.16□□□□□ -0.94
VIM-202ENST00000421459 SMAP1Q8IYB5 467 aaPredicted RBP9.16□□□□□ -0.94
VIM-202ENST00000421459 REXO1Q8N1G1 1221 aaKnown RBP9.16□□□□□ -0.94
VIM-202ENST00000421459 SLC39A11Q8N1S5 342 aa9.16□□□□□ -0.94
VIM-202ENST00000421459 MRPL43Q8N983 215 aaKnown RBP9.16□□□□□ -0.94
VIM-202ENST00000421459 KREMEN2Q8NCW0 462 aa9.16□□□□□ -0.94
VIM-202ENST00000421459 BCL7CQ8WUZ0 217 aaPredicted RBP9.16□□□□□ -0.94
VIM-202ENST00000421459 CCDC136Q96JN2 1154 aa9.16□□□□□ -0.94
VIM-202ENST00000421459 JAKMIP1Q96N16 626 aaKnown RBP9.16□□□□□ -0.94
VIM-202ENST00000421459 CDCA3Q99618 268 aaPredicted RBP9.16□□□□□ -0.94
VIM-202ENST00000421459 LARP6Q9BRS8 491 aaKnown RBP9.16□□□□□ -0.94
VIM-202ENST00000421459 GLT8D2Q9H1C3 349 aa9.16□□□□□ -0.94
VIM-202ENST00000421459 NCOA5Q9HCD5 579 aaKnown RBP9.16□□□□□ -0.94
VIM-202ENST00000421459 DISC1Q9NRI5 854 aa9.16□□□□□ -0.94
VIM-202ENST00000421459 SPG21Q9NZD8 308 aa9.16□□□□□ -0.94
VIM-202ENST00000421459 TCEAL9Q9UHQ7 104 aa9.16□□□□□ -0.94
VIM-202ENST00000421459 PUF60Q9UHX1 559 aaKnown RBP9.16□□□□□ -0.94
VIM-202ENST00000421459 LZTS1Q9Y250 596 aa9.16□□□□□ -0.94
VIM-202ENST00000421459 HCFC2Q9Y5Z7 792 aa9.16□□□□□ -0.94
VIM-202ENST00000421459 CFAP54Q96N23 3096 aa9.16□□□□□ -0.94
VIM-202ENST00000421459 MAGEB2O15479 319 aa9.15□□□□□ -0.94
VIM-202ENST00000421459 B4GALT3O60512 393 aa9.15□□□□□ -0.94
VIM-202ENST00000421459 STBD1O95210 358 aa9.15□□□□□ -0.94
VIM-202ENST00000421459 BRD1O95696 1058 aa9.15□□□□□ -0.94
VIM-202ENST00000421459 CXCL14O95715 111 aa9.15□□□□□ -0.94
VIM-202ENST00000421459 EPCAMP16422 314 aa9.15□□□□□ -0.94
VIM-202ENST00000421459 CIITAP33076 1130 aa9.15□□□□□ -0.94
VIM-202ENST00000421459 BCAR1P56945 870 aa9.15□□□□□ -0.94
VIM-202ENST00000421459 SETQ01105 290 aaPredicted RBP9.15□□□□□ -0.94
VIM-202ENST00000421459 KRT17Q04695 432 aa9.15□□□□□ -0.94
VIM-202ENST00000421459 NTRK3Q16288 839 aa9.15□□□□□ -0.94
VIM-202ENST00000421459 MTERF2Q49AM1 385 aa9.15□□□□□ -0.94
VIM-202ENST00000421459 BMP2KLQ5H9B9 411 aa9.15□□□□□ -0.94
VIM-202ENST00000421459 RARS2Q5T160 578 aaKnown RBP9.15□□□□□ -0.94
VIM-202ENST00000421459 PDE12Q6L8Q7 609 aaKnown RBP9.15□□□□□ -0.94
VIM-202ENST00000421459 ZBTB33Q86T24 672 aa9.15□□□□□ -0.94
VIM-202ENST00000421459 KSR1Q8IVT5 923 aa9.15□□□□□ -0.94
VIM-202ENST00000421459 ABI1Q8IZP0 508 aa9.15□□□□□ -0.94
VIM-202ENST00000421459 LRRC43Q8N309 656 aa9.15□□□□□ -0.94
VIM-202ENST00000421459 NLRP7Q8WX94 980 aa9.15□□□□□ -0.94
VIM-202ENST00000421459 SCLT1Q96NL6 688 aa9.15□□□□□ -0.94
VIM-202ENST00000421459 CEP89Q96ST8 783 aa9.15□□□□□ -0.94
VIM-202ENST00000421459 MAP7D2Q96T17 732 aa9.15□□□□□ -0.94
VIM-202ENST00000421459 SLC26A6Q9BXS9 759 aa9.15□□□□□ -0.94
VIM-202ENST00000421459 NGRNQ9NPE2 291 aaKnown RBP9.15□□□□□ -0.94
VIM-202ENST00000421459 NRBP2Q9NSY0 501 aa9.15□□□□□ -0.94
VIM-202ENST00000421459 SNX14Q9Y5W7 946 aa9.15□□□□□ -0.94
VIM-202ENST00000421459 LOXHD1Q8IVV2 1947 aa9.15□□□□□ -0.95
VIM-202ENST00000421459 FNDC1Q4ZHG4 1894 aaPredicted RBP9.15□□□□□ -0.95
VIM-202ENST00000421459 A0A087WZ62 844 aa9.14□□□□□ -0.95
VIM-202ENST00000421459 A0A0U1RQF3 1178 aa9.14□□□□□ -0.95
VIM-202ENST00000421459 ESYT2A0FGR8 921 aa9.14□□□□□ -0.95
VIM-202ENST00000421459 WDR64B1ANS9 1081 aa9.14□□□□□ -0.95
VIM-202ENST00000421459 ZC3H11AO75152 810 aaKnown RBP eCLIP9.14□□□□□ -0.95
VIM-202ENST00000421459 TDP2O95551 362 aa9.14□□□□□ -0.95
VIM-202ENST00000421459 TMOD1P28289 359 aa9.14□□□□□ -0.95
VIM-202ENST00000421459 AFF1P51825 1210 aaKnown RBP9.14□□□□□ -0.95
VIM-202ENST00000421459 TBC1D8BQ0IIM8 1120 aa9.14□□□□□ -0.95
VIM-202ENST00000421459 SMC1AQ14683 1233 aaKnown RBP9.14□□□□□ -0.95
VIM-202ENST00000421459 TARBP2Q15633 366 aaKnown RBP9.14□□□□□ -0.95
VIM-202ENST00000421459 LRCH2Q5VUJ6 765 aa9.14□□□□□ -0.95
VIM-202ENST00000421459 VPS52Q8N1B4 723 aa9.14□□□□□ -0.95
VIM-202ENST00000421459 ZNF579Q8NAF0 562 aaKnown RBP9.14□□□□□ -0.95
VIM-202ENST00000421459 TBCKQ8TEA7 893 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms