RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 TSPY26PQ9H489 355 aa15.77■□□□□ 0.12
SF3B1-204ENST00000414963 ST6GALNAC4Q9H4F1 302 aa15.77■□□□□ 0.12
SF3B1-204ENST00000414963 PHF24Q9UPV7 400 aa15.77■□□□□ 0.12
SF3B1-204ENST00000414963 PPP1R3GB7ZBB8 358 aa15.76■□□□□ 0.11
SF3B1-204ENST00000414963 DNM1LO00429 736 aa15.76■□□□□ 0.11
SF3B1-204ENST00000414963 GJB1P08034 283 aa15.76■□□□□ 0.11
SF3B1-204ENST00000414963 SCP2P22307 547 aa15.76■□□□□ 0.11
SF3B1-204ENST00000414963 NBPF20Q3BBV1 942 aa15.76■□□□□ 0.11
SF3B1-204ENST00000414963 ODR4Q5SWX8 454 aa15.76■□□□□ 0.11
SF3B1-204ENST00000414963 NFRKBQ6P4R8 1299 aa15.76■□□□□ 0.11
SF3B1-204ENST00000414963 MAEAQ7L5Y9 396 aa15.76■□□□□ 0.11
SF3B1-204ENST00000414963 EPM2AIP1Q7L775 607 aaPredicted RBP15.76■□□□□ 0.11
SF3B1-204ENST00000414963 SFR1Q86XK3 245 aa15.76■□□□□ 0.11
SF3B1-204ENST00000414963 ADSSL1Q8N142 457 aa15.76■□□□□ 0.11
SF3B1-204ENST00000414963 C7orf31Q8N865 590 aa15.76■□□□□ 0.11
SF3B1-204ENST00000414963 KIAA0895Q8NCT3 520 aa15.76■□□□□ 0.11
SF3B1-204ENST00000414963 LMBR1Q8WVP7 490 aa15.76■□□□□ 0.11
SF3B1-204ENST00000414963 TRAPPC12Q8WVT3 735 aa15.76■□□□□ 0.11
SF3B1-204ENST00000414963 DEFB118Q96PH6 123 aa15.76■□□□□ 0.11
SF3B1-204ENST00000414963 STRA6Q9BX79 667 aa15.76■□□□□ 0.11
SF3B1-204ENST00000414963 ZHX3Q9H4I2 956 aa15.76■□□□□ 0.11
SF3B1-204ENST00000414963 POLD4Q9HCU8 107 aa15.76■□□□□ 0.11
SF3B1-204ENST00000414963 GPRC5CQ9NQ84 441 aa15.76■□□□□ 0.11
SF3B1-204ENST00000414963 SETD4Q9NVD3 440 aa15.76■□□□□ 0.11
SF3B1-204ENST00000414963 DACH1Q9UI36 760 aa15.76■□□□□ 0.11
SF3B1-204ENST00000414963 ARID2Q68CP9 1835 aa15.75■□□□□ 0.11
SF3B1-204ENST00000414963 GRIN2DO15399 1336 aa15.75■□□□□ 0.11
SF3B1-204ENST00000414963 ASAP2O43150 1006 aa15.75■□□□□ 0.11
SF3B1-204ENST00000414963 ERCC5P28715 1186 aaPredicted RBP15.75■□□□□ 0.11
SF3B1-204ENST00000414963 PRCPP42785 496 aa15.75■□□□□ 0.11
SF3B1-204ENST00000414963 DNM2P50570 870 aa15.75■□□□□ 0.11
SF3B1-204ENST00000414963 PTPN11Q06124 597 aaPredicted RBP15.75■□□□□ 0.11
SF3B1-204ENST00000414963 ALCAMQ13740 583 aa15.75■□□□□ 0.11
SF3B1-204ENST00000414963 MXD4Q14582 209 aaPredicted RBP15.75■□□□□ 0.11
SF3B1-204ENST00000414963 ANO6Q4KMQ2 910 aa15.75■□□□□ 0.11
SF3B1-204ENST00000414963 EFCAB12Q6NXP0 572 aa15.75■□□□□ 0.11
SF3B1-204ENST00000414963 ZNF720Q7Z2F6 126 aa15.75■□□□□ 0.11
SF3B1-204ENST00000414963 FAM178BQ8IXR5 827 aa15.75■□□□□ 0.11
SF3B1-204ENST00000414963 GUF1Q8N442 669 aaKnown RBP15.75■□□□□ 0.11
SF3B1-204ENST00000414963 HPS3Q969F9 1004 aa15.75■□□□□ 0.11
SF3B1-204ENST00000414963 TMEM143Q96AN5 459 aa15.75■□□□□ 0.11
SF3B1-204ENST00000414963 BPIFA3Q9BQP9 254 aa15.75■□□□□ 0.11
SF3B1-204ENST00000414963 SEZ6LQ9BYH1 1024 aa15.75■□□□□ 0.11
SF3B1-204ENST00000414963 NAT10Q9H0A0 1025 aaKnown RBP15.75■□□□□ 0.11
SF3B1-204ENST00000414963 POLR3FQ9H1D9 316 aaPredicted RBP15.75■□□□□ 0.11
SF3B1-204ENST00000414963 SLC39A2Q9NP94 309 aa15.75■□□□□ 0.11
SF3B1-204ENST00000414963 HDAC6Q9UBN7 1215 aa15.75■□□□□ 0.11
SF3B1-204ENST00000414963 GDAQ9Y2T3 454 aa15.75■□□□□ 0.11
SF3B1-204ENST00000414963 SCN10AQ9Y5Y9 1956 aa15.75■□□□□ 0.11
SF3B1-204ENST00000414963 SMIM35A0A1B0GVV1 85 aa15.74■□□□□ 0.11
SF3B1-204ENST00000414963 C17orf102A2RUQ5 167 aa15.74■□□□□ 0.11
SF3B1-204ENST00000414963 EIF3DO15371 548 aaKnown RBP eCLIP15.74■□□□□ 0.11
SF3B1-204ENST00000414963 PPP1R37O75864 691 aa15.74■□□□□ 0.11
SF3B1-204ENST00000414963 SGPL1O95470 568 aa15.74■□□□□ 0.11
SF3B1-204ENST00000414963 CD44P16070 742 aaKnown RBP15.74■□□□□ 0.11
SF3B1-204ENST00000414963 GLRA2P23416 452 aa15.74■□□□□ 0.11
SF3B1-204ENST00000414963 TMOD1P28289 359 aa15.74■□□□□ 0.11
SF3B1-204ENST00000414963 ABCD1P33897 745 aa15.74■□□□□ 0.11
SF3B1-204ENST00000414963 NAMPTP43490 491 aa15.74■□□□□ 0.11
SF3B1-204ENST00000414963 NPTX2P47972 431 aa15.74■□□□□ 0.11
SF3B1-204ENST00000414963 SMTNP53814 917 aa15.74■□□□□ 0.11
SF3B1-204ENST00000414963 NCKAP1LP55160 1127 aa15.74■□□□□ 0.11
SF3B1-204ENST00000414963 SOX10P56693 466 aa15.74■□□□□ 0.11
SF3B1-204ENST00000414963 IGBP1P78318 339 aa15.74■□□□□ 0.11
SF3B1-204ENST00000414963 POU5F1BQ06416 359 aa15.74■□□□□ 0.11
SF3B1-204ENST00000414963 DMP1Q13316 513 aaPredicted RBP15.74■□□□□ 0.11
SF3B1-204ENST00000414963 HIC1Q14526 733 aa15.74■□□□□ 0.11
SF3B1-204ENST00000414963 PPP2R5AQ15172 486 aa15.74■□□□□ 0.11
SF3B1-204ENST00000414963 BMT2Q1RMZ1 405 aa15.74■□□□□ 0.11
SF3B1-204ENST00000414963 FOXR2Q6PJQ5 311 aa15.74■□□□□ 0.11
SF3B1-204ENST00000414963 GAS2L3Q86XJ1 694 aa15.74■□□□□ 0.11
SF3B1-204ENST00000414963 SMYD4Q8IYR2 804 aaPredicted RBP15.74■□□□□ 0.11
SF3B1-204ENST00000414963 SLC43A3Q8NBI5 491 aa15.74■□□□□ 0.11
SF3B1-204ENST00000414963 ZNF507Q8TCN5 953 aa15.74■□□□□ 0.11
SF3B1-204ENST00000414963 PRPF31Q8WWY3 499 aaKnown RBP15.74■□□□□ 0.11
SF3B1-204ENST00000414963 PSPC1Q8WXF1 523 aaKnown RBP15.74■□□□□ 0.11
SF3B1-204ENST00000414963 BSNDQ8WZ55 320 aa15.74■□□□□ 0.11
SF3B1-204ENST00000414963 DHTKD1Q96HY7 919 aaPredicted RBP15.74■□□□□ 0.11
SF3B1-204ENST00000414963 IFT74Q96LB3 600 aa15.74■□□□□ 0.11
SF3B1-204ENST00000414963 GLT1D1Q96MS3 346 aa15.74■□□□□ 0.11
SF3B1-204ENST00000414963 DNAJC25Q9H1X3 360 aa15.74■□□□□ 0.11
SF3B1-204ENST00000414963 MRPL44Q9H9J2 332 aaKnown RBP15.74■□□□□ 0.11
SF3B1-204ENST00000414963 SUGCTQ9HAC7 445 aa15.74■□□□□ 0.11
SF3B1-204ENST00000414963 SUCLA2Q9P2R7 463 aaPredicted RBP15.74■□□□□ 0.11
SF3B1-204ENST00000414963 GTF2IRD1Q9UHL9 959 aa15.74■□□□□ 0.11
SF3B1-204ENST00000414963 KBTBD13C9JR72 458 aa15.73■□□□□ 0.11
SF3B1-204ENST00000414963 H0YCG3 227 aa15.73■□□□□ 0.11
SF3B1-204ENST00000414963 KIF20AO95235 890 aa15.73■□□□□ 0.11
SF3B1-204ENST00000414963 MYCNP04198 464 aaPredicted RBP15.73■□□□□ 0.11
SF3B1-204ENST00000414963 PEX3P56589 373 aa15.73■□□□□ 0.11
SF3B1-204ENST00000414963 CDC42EP1Q00587 391 aa15.73■□□□□ 0.11
SF3B1-204ENST00000414963 LAMTOR4Q0VGL1 99 aa15.73■□□□□ 0.11
SF3B1-204ENST00000414963 DRP2Q13474 957 aa15.73■□□□□ 0.11
SF3B1-204ENST00000414963 STIM1Q13586 685 aa15.73■□□□□ 0.11
SF3B1-204ENST00000414963 C11orf57Q6ZUT1 292 aaPredicted RBP15.73■□□□□ 0.11
SF3B1-204ENST00000414963 STXBP4Q6ZWJ1 553 aa15.73■□□□□ 0.11
SF3B1-204ENST00000414963 KIAA0319LQ8IZA0 1049 aa15.73■□□□□ 0.11
SF3B1-204ENST00000414963 MYOCDQ8IZQ8 938 aa15.73■□□□□ 0.11
SF3B1-204ENST00000414963 ZNF710Q8N1W2 664 aa15.73■□□□□ 0.11
SF3B1-204ENST00000414963 LRRC71Q8N4P6 559 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms