RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 MRFAP1L1Q96HT8 127 aa7.34□□□□□ -1.23
VPS41-204ENST00000413141 TSG101Q99816 390 aa7.34□□□□□ -1.23
VPS41-204ENST00000413141 C16orf70Q9BSU1 422 aa7.34□□□□□ -1.23
VPS41-204ENST00000413141 STRA6Q9BX79 667 aa7.34□□□□□ -1.23
VPS41-204ENST00000413141 POLR3FQ9H1D9 316 aaPredicted RBP7.34□□□□□ -1.23
VPS41-204ENST00000413141 KCTD10Q9H3F6 313 aa7.34□□□□□ -1.23
VPS41-204ENST00000413141 THAP9Q9H5L6 903 aa7.34□□□□□ -1.23
VPS41-204ENST00000413141 NRBP2Q9NSY0 501 aa7.34□□□□□ -1.23
VPS41-204ENST00000413141 ERAP1Q9NZ08 941 aa7.34□□□□□ -1.23
VPS41-204ENST00000413141 ZNF215Q9UL58 517 aaPredicted RBP7.34□□□□□ -1.23
VPS41-204ENST00000413141 FAM184BQ9ULE4 1060 aa7.34□□□□□ -1.23
VPS41-204ENST00000413141 TRPC6Q9Y210 931 aa7.34□□□□□ -1.23
VPS41-204ENST00000413141 ADGRA3Q8IWK6 1321 aa7.33□□□□□ -1.24
VPS41-204ENST00000413141 A6NJR5 290 aa7.33□□□□□ -1.24
VPS41-204ENST00000413141 KCNJ18B7U540 433 aa7.33□□□□□ -1.24
VPS41-204ENST00000413141 GAS2O43903 313 aaKnown RBP7.33□□□□□ -1.24
VPS41-204ENST00000413141 HBP1O60381 514 aa7.33□□□□□ -1.24
VPS41-204ENST00000413141 PPFIA4O75335 1185 aa7.33□□□□□ -1.24
VPS41-204ENST00000413141 MAFO75444 373 aaPredicted RBP7.33□□□□□ -1.24
VPS41-204ENST00000413141 PRPF6O94906 941 aaKnown RBP7.33□□□□□ -1.24
VPS41-204ENST00000413141 F2P00734 622 aa7.33□□□□□ -1.24
VPS41-204ENST00000413141 SERPINC1P01008 464 aa7.33□□□□□ -1.24
VPS41-204ENST00000413141 GNRH1P01148 92 aa7.33□□□□□ -1.24
VPS41-204ENST00000413141 EEF1GP26641 437 aaKnown RBP7.33□□□□□ -1.24
VPS41-204ENST00000413141 NPTX2P47972 431 aa7.33□□□□□ -1.24
VPS41-204ENST00000413141 PEX3P56589 373 aa7.33□□□□□ -1.24
VPS41-204ENST00000413141 KCNA1Q09470 495 aa7.33□□□□□ -1.24
VPS41-204ENST00000413141 KCNJ12Q14500 433 aa7.33□□□□□ -1.24
VPS41-204ENST00000413141 DGKDQ16760 1214 aa7.33□□□□□ -1.24
VPS41-204ENST00000413141 KNOP1Q1ED39 458 aaKnown RBP7.33□□□□□ -1.24
VPS41-204ENST00000413141 EDRF1Q3B7T1 1238 aa7.33□□□□□ -1.24
VPS41-204ENST00000413141 ZC2HC1CQ53FD0 456 aaPredicted RBP7.33□□□□□ -1.24
VPS41-204ENST00000413141 TCP11X2Q5H9J9 407 aa7.33□□□□□ -1.24
VPS41-204ENST00000413141 APTXQ7Z2E3 356 aaKnown RBP7.33□□□□□ -1.24
VPS41-204ENST00000413141 IRF2BP1Q8IU81 584 aa7.33□□□□□ -1.24
VPS41-204ENST00000413141 ZC3H3Q8IXZ2 948 aaKnown RBP7.33□□□□□ -1.24
VPS41-204ENST00000413141 SLC17A8Q8NDX2 589 aa7.33□□□□□ -1.24
VPS41-204ENST00000413141 SPIRE2Q8WWL2 714 aa7.33□□□□□ -1.24
VPS41-204ENST00000413141 BSNDQ8WZ55 320 aa7.33□□□□□ -1.24
VPS41-204ENST00000413141 ERO1AQ96HE7 468 aa7.33□□□□□ -1.24
VPS41-204ENST00000413141 CNOT6LQ96LI5 555 aaKnown RBP7.33□□□□□ -1.24
VPS41-204ENST00000413141 XPO4Q9C0E2 1151 aaKnown RBP7.33□□□□□ -1.24
VPS41-204ENST00000413141 ST6GALNAC4Q9H4F1 302 aa7.33□□□□□ -1.24
VPS41-204ENST00000413141 C17orf75Q9HAS0 396 aa7.33□□□□□ -1.24
VPS41-204ENST00000413141 TYW1Q9NV66 732 aaKnown RBP7.33□□□□□ -1.24
VPS41-204ENST00000413141 INTS13Q9NVM9 706 aa7.33□□□□□ -1.24
VPS41-204ENST00000413141 IFNKQ9P0W0 207 aa7.33□□□□□ -1.24
VPS41-204ENST00000413141 SRRDQ9UH36 339 aa7.33□□□□□ -1.24
VPS41-204ENST00000413141 LIMA1Q9UHB6 759 aaKnown RBP7.33□□□□□ -1.24
VPS41-204ENST00000413141 TRAF3IP3Q9Y228 551 aa7.33□□□□□ -1.24
VPS41-204ENST00000413141 Q9Y3F1 56 aa7.33□□□□□ -1.24
VPS41-204ENST00000413141 COL1A2P08123 1366 aa7.33□□□□□ -1.24
VPS41-204ENST00000413141 IGKV6-21A0A0C4DH24 114 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 A0A1B0GTH6 734 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 H3BRB1 525 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 PDXKO00764 312 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 SLC16A4O15374 487 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 DYNC1LI2O43237 492 aaPredicted RBP7.32□□□□□ -1.24
VPS41-204ENST00000413141 TGFB1I1O43294 461 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 CBFA2T2O43439 604 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 CALUO43852 315 aaPredicted RBP7.32□□□□□ -1.24
VPS41-204ENST00000413141 FKTNO75072 461 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 GABBR2O75899 941 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 C22orf31O95567 290 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 HMGCRP04035 888 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 ELNP15502 786 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 CDK11BP21127 795 aaKnown RBP7.32□□□□□ -1.24
VPS41-204ENST00000413141 GLRA2P23416 452 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 HOXD10P28358 340 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 ARL2P36404 184 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 NAMPTP43490 491 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 CPT1AP50416 773 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 UBASH3AP57075 661 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 GTF2BQ00403 316 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 FKBP3Q00688 224 aaKnown RBP7.32□□□□□ -1.24
VPS41-204ENST00000413141 CACNB2Q08289 660 aaPredicted RBP7.32□□□□□ -1.24
VPS41-204ENST00000413141 TBC1D8BQ0IIM8 1120 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 TRIM32Q13049 653 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 KRT31Q15323 416 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 ZNF484Q5JVG2 852 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 HAUS6Q7Z4H7 955 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 KSR1Q8IVT5 923 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 FAM114A1Q8IWE2 563 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 EXOC8Q8IYI6 725 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 TMEM161BQ8NDZ6 487 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 ANKRD20A12PQ8NF67 263 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 ASAP3Q8TDY4 903 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 ZNF296Q8WUU4 475 aaPredicted RBP7.32□□□□□ -1.24
VPS41-204ENST00000413141 TRAPPC12Q8WVT3 735 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 KCNN1Q92952 543 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 TMEM143Q96AN5 459 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 HVCN1Q96D96 273 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 CEP63Q96MT8 703 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 NAP1L5Q96NT1 182 aaPredicted RBP7.32□□□□□ -1.24
VPS41-204ENST00000413141 CTAGE1Q96RT6 745 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 KIFC3Q9BVG8 833 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 SRRTQ9BXP5 876 aaKnown RBP7.32□□□□□ -1.24
VPS41-204ENST00000413141 RNPEPQ9H4A4 650 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 TUT1Q9H6E5 874 aaKnown RBP7.32□□□□□ -1.24
VPS41-204ENST00000413141 KMT5AQ9NQR1 393 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms