RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 CYP4A11Q02928 519 aa14.04□□□□□ -0.16
PTPRN-202ENST00000409251 CXCL9Q07325 125 aa14.04□□□□□ -0.16
PTPRN-202ENST00000409251 FAM83BQ5T0W9 1011 aa14.04□□□□□ -0.16
PTPRN-202ENST00000409251 HHIPL2Q6UWX4 724 aa14.04□□□□□ -0.16
PTPRN-202ENST00000409251 ERICH1Q86X53 443 aa14.04□□□□□ -0.16
PTPRN-202ENST00000409251 U2AF1L4Q8WU68 220 aaKnown RBP14.04□□□□□ -0.16
PTPRN-202ENST00000409251 CAVIN3Q969G5 261 aa14.04□□□□□ -0.16
PTPRN-202ENST00000409251 TSG101Q99816 390 aa14.04□□□□□ -0.16
PTPRN-202ENST00000409251 FGFR1OP2Q9NVK5 253 aa14.04□□□□□ -0.16
PTPRN-202ENST00000409251 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.04□□□□□ -0.16
PTPRN-202ENST00000409251 FGFR1OPO95684 399 aaKnown RBP14.04□□□□□ -0.16
PTPRN-202ENST00000409251 TNIP1Q15025 636 aa14.04□□□□□ -0.16
PTPRN-202ENST00000409251 GLE1Q53GS7 698 aaKnown RBP14.04□□□□□ -0.16
PTPRN-202ENST00000409251 NAALADL2Q58DX5 795 aa14.04□□□□□ -0.16
PTPRN-202ENST00000409251 CC2D2BQ6DHV5 1058 aa14.04□□□□□ -0.16
PTPRN-202ENST00000409251 CYP2W1Q8TAV3 490 aa14.04□□□□□ -0.16
PTPRN-202ENST00000409251 ECT2Q9H8V3 914 aa14.04□□□□□ -0.16
PTPRN-202ENST00000409251 NOC2LQ9Y3T9 749 aaKnown RBP14.04□□□□□ -0.16
PTPRN-202ENST00000409251 CCT8L1PA6NM43 557 aa14.03□□□□□ -0.16
PTPRN-202ENST00000409251 DDX39AO00148 427 aaKnown RBP14.03□□□□□ -0.16
PTPRN-202ENST00000409251 ACSL3O95573 720 aa14.03□□□□□ -0.16
PTPRN-202ENST00000409251 NDUFB10O96000 172 aa14.03□□□□□ -0.16
PTPRN-202ENST00000409251 ASIC2Q16515 512 aa14.03□□□□□ -0.16
PTPRN-202ENST00000409251 CALCRLQ16602 461 aa14.03□□□□□ -0.16
PTPRN-202ENST00000409251 MEA1Q16626 185 aa14.03□□□□□ -0.16
PTPRN-202ENST00000409251 PRR16Q569H4 304 aa14.03□□□□□ -0.16
PTPRN-202ENST00000409251 DENND2CQ68D51 928 aa14.03□□□□□ -0.16
PTPRN-202ENST00000409251 SEPT14Q6ZU15 432 aa14.03□□□□□ -0.16
PTPRN-202ENST00000409251 SV2BQ7L1I2 683 aa14.03□□□□□ -0.16
PTPRN-202ENST00000409251 XPO6Q96QU8 1125 aaKnown RBP14.03□□□□□ -0.16
PTPRN-202ENST00000409251 DDX23Q9BUQ8 820 aaKnown RBP14.03□□□□□ -0.16
PTPRN-202ENST00000409251 NOP53Q9NZM5 478 aaKnown RBP14.03□□□□□ -0.16
PTPRN-202ENST00000409251 INTUQ9ULD6 942 aa14.03□□□□□ -0.16
PTPRN-202ENST00000409251 TRPC6Q9Y210 931 aa14.03□□□□□ -0.16
PTPRN-202ENST00000409251 RREB1Q92766 1687 aa14.03□□□□□ -0.16
PTPRN-202ENST00000409251 DOCK2Q92608 1830 aa14.03□□□□□ -0.16
PTPRN-202ENST00000409251 ZNF76P36508 570 aa14.03□□□□□ -0.16
PTPRN-202ENST00000409251 STYK1Q6J9G0 422 aa14.03□□□□□ -0.16
PTPRN-202ENST00000409251 RFX8Q6ZV50 586 aa14.03□□□□□ -0.16
PTPRN-202ENST00000409251 LRRC15Q8TF66 581 aa14.03□□□□□ -0.16
PTPRN-202ENST00000409251 FMO2Q99518 471 aa14.03□□□□□ -0.16
PTPRN-202ENST00000409251 SH2D3AQ9BRG2 576 aa14.03□□□□□ -0.16
PTPRN-202ENST00000409251 TRIM9Q9C026 710 aa14.03□□□□□ -0.16
PTPRN-202ENST00000409251 SEMA6BQ9H3T3 888 aa14.03□□□□□ -0.16
PTPRN-202ENST00000409251 SLX4Q8IY92 1834 aa14.03□□□□□ -0.16
PTPRN-202ENST00000409251 LACTBP83111 547 aaPredicted RBP14.03□□□□□ -0.16
PTPRN-202ENST00000409251 MIIPQ5JXC2 388 aa14.03□□□□□ -0.16
PTPRN-202ENST00000409251 TMED8Q6PL24 325 aaPredicted RBP14.03□□□□□ -0.16
PTPRN-202ENST00000409251 CTNNBL1Q8WYA6 563 aaPredicted RBP14.03□□□□□ -0.16
PTPRN-202ENST00000409251 PNMA3Q9UL41 463 aa14.03□□□□□ -0.16
PTPRN-202ENST00000409251 OR52Z1P0C646 297 aa14.02□□□□□ -0.16
PTPRN-202ENST00000409251 EPB41P11171 864 aaKnown RBP14.02□□□□□ -0.16
PTPRN-202ENST00000409251 LONP1P36776 959 aaKnown RBP14.02□□□□□ -0.16
PTPRN-202ENST00000409251 UAP1Q16222 522 aaPredicted RBP14.02□□□□□ -0.16
PTPRN-202ENST00000409251 BZW1Q7L1Q6 419 aaKnown RBP14.02□□□□□ -0.16
PTPRN-202ENST00000409251 VSIG1Q86XK7 387 aa14.02□□□□□ -0.16
PTPRN-202ENST00000409251 EGFL6Q8IUX8 553 aa14.02□□□□□ -0.16
PTPRN-202ENST00000409251 OSBPL1AQ9BXW6 950 aa14.02□□□□□ -0.16
PTPRN-202ENST00000409251 RCAN1P53805 252 aa14.02□□□□□ -0.17
PTPRN-202ENST00000409251 ATP11AP98196 1134 aa14.02□□□□□ -0.17
PTPRN-202ENST00000409251 TRIP13Q15645 432 aaPredicted RBP14.02□□□□□ -0.17
PTPRN-202ENST00000409251 KIAA1755Q5JYT7 1200 aa14.02□□□□□ -0.17
PTPRN-202ENST00000409251 CNNM4Q6P4Q7 775 aa14.02□□□□□ -0.17
PTPRN-202ENST00000409251 USP38Q8NB14 1042 aa14.02□□□□□ -0.17
PTPRN-202ENST00000409251 TMOD4Q9NZQ9 345 aa14.02□□□□□ -0.17
PTPRN-202ENST00000409251 SWAP70Q9UH65 585 aa14.02□□□□□ -0.17
PTPRN-202ENST00000409251 LY75O60449 1722 aa14.02□□□□□ -0.17
PTPRN-202ENST00000409251 YY1P25490 414 aa14.02□□□□□ -0.17
PTPRN-202ENST00000409251 ALDH5A1P51649 535 aaPredicted RBP14.02□□□□□ -0.17
PTPRN-202ENST00000409251 AMPD3Q01432 767 aa14.02□□□□□ -0.17
PTPRN-202ENST00000409251 MAN2A1Q16706 1144 aa14.02□□□□□ -0.17
PTPRN-202ENST00000409251 PPP4R3AQ6IN85 833 aa14.02□□□□□ -0.17
PTPRN-202ENST00000409251 GIMAP8Q8ND71 665 aaPredicted RBP14.02□□□□□ -0.17
PTPRN-202ENST00000409251 EPS8L3Q8TE67 593 aaKnown RBP14.02□□□□□ -0.17
PTPRN-202ENST00000409251 SNX29Q8TEQ0 813 aa14.02□□□□□ -0.17
PTPRN-202ENST00000409251 ZNF70Q9UC06 446 aaPredicted RBP14.02□□□□□ -0.17
PTPRN-202ENST00000409251 PGRMC1O00264 195 aaKnown RBP14.01□□□□□ -0.17
PTPRN-202ENST00000409251 ZFYVE27Q5T4F4 411 aa14.01□□□□□ -0.17
PTPRN-202ENST00000409251 RSBN1LQ6PCB5 846 aaPredicted RBP14.01□□□□□ -0.17
PTPRN-202ENST00000409251 C7orf43Q8WVR3 580 aa14.01□□□□□ -0.17
PTPRN-202ENST00000409251 DHTKD1Q96HY7 919 aaPredicted RBP14.01□□□□□ -0.17
PTPRN-202ENST00000409251 ATP6V0A4Q9HBG4 840 aa14.01□□□□□ -0.17
PTPRN-202ENST00000409251 ARHGEF10LQ9HCE6 1279 aa14.01□□□□□ -0.17
PTPRN-202ENST00000409251 PIM2Q9P1W9 311 aa14.01□□□□□ -0.17
PTPRN-202ENST00000409251 HDAC9Q9UKV0 1011 aa14.01□□□□□ -0.17
PTPRN-202ENST00000409251 ARAP2Q8WZ64 1704 aa14.01□□□□□ -0.17
PTPRN-202ENST00000409251 GSTTP1A0A1W2PQM5 241 aa14.01□□□□□ -0.17
PTPRN-202ENST00000409251 TCP11X1B4DZS4 312 aa14.01□□□□□ -0.17
PTPRN-202ENST00000409251 RBBP5Q15291 538 aaKnown RBP14.01□□□□□ -0.17
PTPRN-202ENST00000409251 CCDC6Q16204 474 aa14.01□□□□□ -0.17
PTPRN-202ENST00000409251 HERC4Q5GLZ8 1057 aaPredicted RBP14.01□□□□□ -0.17
PTPRN-202ENST00000409251 ZMYND12Q9H0C1 365 aa14.01□□□□□ -0.17
PTPRN-202ENST00000409251 ZBTB21Q9ULJ3 1066 aa14.01□□□□□ -0.17
PTPRN-202ENST00000409251 NPHP3-ACAD11A0A0J9YXS1 232 aa14.01□□□□□ -0.17
PTPRN-202ENST00000409251 AADACL2Q6P093 401 aa14.01□□□□□ -0.17
PTPRN-202ENST00000409251 GJB7Q6PEY0 223 aa14.01□□□□□ -0.17
PTPRN-202ENST00000409251 TRPM8Q7Z2W7 1104 aa14.01□□□□□ -0.17
PTPRN-202ENST00000409251 SIAH1Q8IUQ4 282 aa14.01□□□□□ -0.17
PTPRN-202ENST00000409251 KIAA0895Q8NCT3 520 aa14.01□□□□□ -0.17
PTPRN-202ENST00000409251 CCDC26Q8TAB7 109 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms