RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 RPAINQ86UA6 219 aa17.7■□□□□ 0.42
HMGA1-204ENST00000401473 EXOC8Q8IYI6 725 aa17.7■□□□□ 0.42
HMGA1-204ENST00000401473 PRPF31Q8WWY3 499 aaKnown RBP17.7■□□□□ 0.42
HMGA1-204ENST00000401473 DDX12PQ92771 950 aa17.7■□□□□ 0.42
HMGA1-204ENST00000401473 DNAJC19Q96DA6 116 aa17.7■□□□□ 0.42
HMGA1-204ENST00000401473 PAGE5Q96GU1 130 aa17.7■□□□□ 0.42
HMGA1-204ENST00000401473 ZNF668Q96K58 619 aaPredicted RBP17.7■□□□□ 0.42
HMGA1-204ENST00000401473 CDHR5Q9HBB8 845 aa17.7■□□□□ 0.42
HMGA1-204ENST00000401473 DACT1Q9NYF0 836 aa17.7■□□□□ 0.42
HMGA1-204ENST00000401473 UMODL1Q5DID0 1318 aa17.7■□□□□ 0.42
HMGA1-204ENST00000401473 TET1Q8NFU7 2136 aa17.7■□□□□ 0.42
HMGA1-204ENST00000401473 GOLGA6L22H0YM25 854 aa17.69■□□□□ 0.42
HMGA1-204ENST00000401473 TLR3O15455 904 aaKnown RBP17.69■□□□□ 0.42
HMGA1-204ENST00000401473 CKBP12277 381 aa17.69■□□□□ 0.42
HMGA1-204ENST00000401473 SYN1P17600 705 aa17.69■□□□□ 0.42
HMGA1-204ENST00000401473 GUCY2CP25092 1073 aa17.69■□□□□ 0.42
HMGA1-204ENST00000401473 TMOD1P28289 359 aa17.69■□□□□ 0.42
HMGA1-204ENST00000401473 FAM102BQ5T8I3 360 aa17.69■□□□□ 0.42
HMGA1-204ENST00000401473 GPT2Q8TD30 523 aa17.69■□□□□ 0.42
HMGA1-204ENST00000401473 REEP2Q9BRK0 252 aa17.69■□□□□ 0.42
HMGA1-204ENST00000401473 PYM1Q9BRP8 204 aaKnown RBP17.69■□□□□ 0.42
HMGA1-204ENST00000401473 OSBPL7Q9BZF2 842 aa17.69■□□□□ 0.42
HMGA1-204ENST00000401473 TNMDQ9H2S6 317 aa17.69■□□□□ 0.42
HMGA1-204ENST00000401473 PRDM5Q9NQX1 630 aaPredicted RBP17.69■□□□□ 0.42
HMGA1-204ENST00000401473 TMEM39AQ9NV64 488 aa17.69■□□□□ 0.42
HMGA1-204ENST00000401473 KCND2Q9NZV8 630 aa17.69■□□□□ 0.42
HMGA1-204ENST00000401473 SUCLA2Q9P2R7 463 aaPredicted RBP17.69■□□□□ 0.42
HMGA1-204ENST00000401473 HIP1RO75146 1068 aa17.69■□□□□ 0.42
HMGA1-204ENST00000401473 CHRNA1P02708 482 aa17.69■□□□□ 0.42
HMGA1-204ENST00000401473 THPOP40225 353 aa17.69■□□□□ 0.42
HMGA1-204ENST00000401473 MDM2Q00987 491 aaPredicted RBP17.69■□□□□ 0.42
HMGA1-204ENST00000401473 ZNF618Q5T7W0 954 aa17.69■□□□□ 0.42
HMGA1-204ENST00000401473 IER5Q5VY09 327 aa17.69■□□□□ 0.42
HMGA1-204ENST00000401473 TRAF7Q6Q0C0 670 aa17.69■□□□□ 0.42
HMGA1-204ENST00000401473 CEP57L1Q8IYX8 460 aa17.69■□□□□ 0.42
HMGA1-204ENST00000401473 CNNM3Q8NE01 707 aa17.69■□□□□ 0.42
HMGA1-204ENST00000401473 MCPH1Q8NEM0 835 aa17.69■□□□□ 0.42
HMGA1-204ENST00000401473 PPP1R16BQ96T49 567 aa17.69■□□□□ 0.42
HMGA1-204ENST00000401473 JPH2Q9BR39 696 aaPredicted RBP17.69■□□□□ 0.42
HMGA1-204ENST00000401473 NOC4LQ9BVI4 516 aaKnown RBP17.69■□□□□ 0.42
HMGA1-204ENST00000401473 TRIM9Q9C026 710 aa17.69■□□□□ 0.42
HMGA1-204ENST00000401473 ZMYND8Q9ULU4 1186 aaPredicted RBP17.69■□□□□ 0.42
HMGA1-204ENST00000401473 AKT3Q9Y243 479 aa17.69■□□□□ 0.42
HMGA1-204ENST00000401473 GAS2O43903 313 aaKnown RBP17.68■□□□□ 0.42
HMGA1-204ENST00000401473 GPR32O75388 356 aa17.68■□□□□ 0.42
HMGA1-204ENST00000401473 DNM2P50570 870 aa17.68■□□□□ 0.42
HMGA1-204ENST00000401473 RHPN2Q8IUC4 686 aa17.68■□□□□ 0.42
HMGA1-204ENST00000401473 NME8Q8N427 588 aa17.68■□□□□ 0.42
HMGA1-204ENST00000401473 ASAP3Q8TDY4 903 aa17.68■□□□□ 0.42
HMGA1-204ENST00000401473 BLZF1Q9H2G9 400 aa17.68■□□□□ 0.42
HMGA1-204ENST00000401473 USP25Q9UHP3 1055 aa17.68■□□□□ 0.42
HMGA1-204ENST00000401473 KIAA0355O15063 1070 aa17.67■□□□□ 0.42
HMGA1-204ENST00000401473 GLRA2P23416 452 aa17.67■□□□□ 0.42
HMGA1-204ENST00000401473 NLRP11P59045 1033 aaKnown RBP17.67■□□□□ 0.42
HMGA1-204ENST00000401473 RBL2Q08999 1139 aa17.67■□□□□ 0.42
HMGA1-204ENST00000401473 LAMTOR4Q0VGL1 99 aa17.67■□□□□ 0.42
HMGA1-204ENST00000401473 CUL4BQ13620 913 aa17.67■□□□□ 0.42
HMGA1-204ENST00000401473 KIZQ2M2Z5 673 aa17.67■□□□□ 0.42
HMGA1-204ENST00000401473 PSPC1Q8WXF1 523 aaKnown RBP17.67■□□□□ 0.42
HMGA1-204ENST00000401473 BSNDQ8WZ55 320 aa17.67■□□□□ 0.42
HMGA1-204ENST00000401473 POLR3FQ9H1D9 316 aaPredicted RBP17.67■□□□□ 0.42
HMGA1-204ENST00000401473 ADAMTS10Q9H324 1103 aa17.67■□□□□ 0.42
HMGA1-204ENST00000401473 HIPK3Q9H422 1215 aa17.67■□□□□ 0.42
HMGA1-204ENST00000401473 CTSHP09668 335 aa17.67■□□□□ 0.42
HMGA1-204ENST00000401473 CYP2C18P33260 490 aa17.67■□□□□ 0.42
HMGA1-204ENST00000401473 GPNMBQ14956 572 aa17.67■□□□□ 0.42
HMGA1-204ENST00000401473 CAGE1Q8TC20 777 aa17.67■□□□□ 0.42
HMGA1-204ENST00000401473 TCP11Q8WWU5 503 aa17.67■□□□□ 0.42
HMGA1-204ENST00000401473 TIGD1Q96MW7 591 aa17.67■□□□□ 0.42
HMGA1-204ENST00000401473 C7orf25Q9BPX7 421 aa17.67■□□□□ 0.42
HMGA1-204ENST00000401473 PPP1R12CQ9BZL4 782 aa17.67■□□□□ 0.42
HMGA1-204ENST00000401473 MAGEF1Q9HAY2 307 aa17.67■□□□□ 0.42
HMGA1-204ENST00000401473 COL4A3BPQ9Y5P4 624 aa17.67■□□□□ 0.42
HMGA1-204ENST00000401473 SCN5AQ14524 2016 aa17.66■□□□□ 0.42
HMGA1-204ENST00000401473 PRR29P0C7W0 189 aa17.66■□□□□ 0.42
HMGA1-204ENST00000401473 SRGAP2CP0DJJ0 459 aa17.66■□□□□ 0.42
HMGA1-204ENST00000401473 GPC3P51654 580 aa17.66■□□□□ 0.42
HMGA1-204ENST00000401473 AMPD3Q01432 767 aa17.66■□□□□ 0.42
HMGA1-204ENST00000401473 MGAT3Q09327 533 aa17.66■□□□□ 0.42
HMGA1-204ENST00000401473 MBTPS1Q14703 1052 aa17.66■□□□□ 0.42
HMGA1-204ENST00000401473 TMEM40Q8WWA1 233 aa17.66■□□□□ 0.42
HMGA1-204ENST00000401473 ERCC4Q92889 916 aaPredicted RBP17.66■□□□□ 0.42
HMGA1-204ENST00000401473 MAP7D2Q96T17 732 aa17.66■□□□□ 0.42
HMGA1-204ENST00000401473 WNT8AQ9H1J5 351 aa17.66■□□□□ 0.42
HMGA1-204ENST00000401473 IFT122Q9HBG6 1241 aa17.66■□□□□ 0.42
HMGA1-204ENST00000401473 GINS2Q9Y248 185 aa17.66■□□□□ 0.42
HMGA1-204ENST00000401473 A0A087WZ62 844 aa17.65■□□□□ 0.42
HMGA1-204ENST00000401473 PITPNM1O00562 1244 aa17.65■□□□□ 0.42
HMGA1-204ENST00000401473 CSDE1O75534 798 aaKnown RBP17.65■□□□□ 0.42
HMGA1-204ENST00000401473 ZNF131P52739 623 aa17.65■□□□□ 0.42
HMGA1-204ENST00000401473 CCL23P55773 120 aa17.65■□□□□ 0.42
HMGA1-204ENST00000401473 CAPSQ13938 189 aa17.65■□□□□ 0.42
HMGA1-204ENST00000401473 MXD4Q14582 209 aaPredicted RBP17.65■□□□□ 0.42
HMGA1-204ENST00000401473 CNNM4Q6P4Q7 775 aa17.65■□□□□ 0.42
HMGA1-204ENST00000401473 RSPH3Q86UC2 560 aa17.65■□□□□ 0.42
HMGA1-204ENST00000401473 KIFAP3Q92845 792 aa17.65■□□□□ 0.42
HMGA1-204ENST00000401473 FDXACB1Q9BRP7 624 aaPredicted RBP17.65■□□□□ 0.42
HMGA1-204ENST00000401473 CELF4Q9BZC1 486 aaKnown RBP17.65■□□□□ 0.42
HMGA1-204ENST00000401473 ODF2LQ9ULJ1 636 aa17.65■□□□□ 0.42
HMGA1-204ENST00000401473 CDY2AQ9Y6F7 541 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms