RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 PPIP5K2O43314 1243 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 CCDC22O60826 627 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 DDAH1O94760 285 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 PDE8BO95263 885 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 PLS3P13797 630 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 FLT3P36888 993 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 ARFIP2P53365 341 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 EIF6P56537 245 aaKnown RBP9.99□□□□□ -0.81
COL28A1-201ENST00000399429 PTK2Q05397 1052 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 KDSRQ06136 332 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 MFSD4BQ5TF39 518 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 MEI1Q5TIA1 1274 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 TTC17Q96AE7 1141 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 ZNF570Q96NI8 536 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 NDNQ99608 321 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 GPCPD1Q9NPB8 672 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 THEGQ9P2T0 379 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.99□□□□□ -0.81
COL28A1-201ENST00000399429 BAZ2BQ9UIF8 2168 aaKnown RBP9.99□□□□□ -0.81
COL28A1-201ENST00000399429 NMT2O60551 498 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 TMCC1O94876 653 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 ZWINTO95229 277 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 CBX6O95503 412 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 ATP6V1B1P15313 513 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 ATF7P17544 494 aaPredicted RBP9.99□□□□□ -0.81
COL28A1-201ENST00000399429 RIPK1Q13546 671 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 KPNB1Q14974 876 aaKnown RBP9.99□□□□□ -0.81
COL28A1-201ENST00000399429 UNC13DQ70J99 1090 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 LCA5Q86VQ0 697 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 C1orf54Q8WWF1 131 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 PHF20Q9BVI0 1012 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 PRDM11Q9NQV5 511 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 LZTS1Q9Y250 596 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 KLRF2D3W0D1 207 aa9.98□□□□□ -0.81
COL28A1-201ENST00000399429 CHRNA3P32297 505 aa9.98□□□□□ -0.81
COL28A1-201ENST00000399429 GCLCP48506 637 aaPredicted RBP9.98□□□□□ -0.81
COL28A1-201ENST00000399429 CEBPAP49715 358 aaPredicted RBP9.98□□□□□ -0.81
COL28A1-201ENST00000399429 CYLC2Q14093 348 aaPredicted RBP9.98□□□□□ -0.81
COL28A1-201ENST00000399429 DHX34Q14147 1143 aaKnown RBP9.98□□□□□ -0.81
COL28A1-201ENST00000399429 MMEL1Q495T6 779 aa9.98□□□□□ -0.81
COL28A1-201ENST00000399429 COL23A1Q86Y22 540 aaPredicted RBP9.98□□□□□ -0.81
COL28A1-201ENST00000399429 MYCT1Q8N699 235 aa9.98□□□□□ -0.81
COL28A1-201ENST00000399429 EPAS1Q99814 870 aa9.98□□□□□ -0.81
COL28A1-201ENST00000399429 MMADHCQ9H3L0 296 aaPredicted RBP9.98□□□□□ -0.81
COL28A1-201ENST00000399429 DDX18Q9NVP1 670 aaKnown RBP9.98□□□□□ -0.81
COL28A1-201ENST00000399429 SAP30BPQ9UHR5 308 aaKnown RBP9.98□□□□□ -0.81
COL28A1-201ENST00000399429 WDR17Q8IZU2 1322 aa9.98□□□□□ -0.81
COL28A1-201ENST00000399429 POTEMA6NI47 508 aa9.98□□□□□ -0.81
COL28A1-201ENST00000399429 MX2P20592 715 aa9.98□□□□□ -0.81
COL28A1-201ENST00000399429 RABGAP1LQ5R372 815 aa9.98□□□□□ -0.81
COL28A1-201ENST00000399429 LRRC43Q8N309 656 aa9.98□□□□□ -0.81
COL28A1-201ENST00000399429 ANKRD27Q96NW4 1050 aa9.98□□□□□ -0.81
COL28A1-201ENST00000399429 SAYSD1Q9NPB0 183 aa9.98□□□□□ -0.81
COL28A1-201ENST00000399429 DNM3Q9UQ16 869 aa9.98□□□□□ -0.81
COL28A1-201ENST00000399429 CTDP1Q9Y5B0 961 aaPredicted RBP9.98□□□□□ -0.81
COL28A1-201ENST00000399429 SYNGAP1Q96PV0 1343 aa9.98□□□□□ -0.81
COL28A1-201ENST00000399429 SHROOM2Q13796 1616 aa9.98□□□□□ -0.81
COL28A1-201ENST00000399429 LAD1O00515 517 aa9.98□□□□□ -0.81
COL28A1-201ENST00000399429 ATP6V1C1P21283 382 aa9.98□□□□□ -0.81
COL28A1-201ENST00000399429 RFX5P48382 616 aaPredicted RBP9.98□□□□□ -0.81
COL28A1-201ENST00000399429 GALCP54803 685 aa9.98□□□□□ -0.81
COL28A1-201ENST00000399429 CDK17Q00537 523 aa9.98□□□□□ -0.81
COL28A1-201ENST00000399429 IRGCQ6NXR0 463 aa9.98□□□□□ -0.81
COL28A1-201ENST00000399429 NSMFQ6X4W1 530 aa9.98□□□□□ -0.81
COL28A1-201ENST00000399429 TEKT1Q969V4 418 aa9.98□□□□□ -0.81
COL28A1-201ENST00000399429 CFAP57Q96MR6 1250 aa9.98□□□□□ -0.81
COL28A1-201ENST00000399429 HEMGNQ9BXL5 484 aa9.98□□□□□ -0.81
COL28A1-201ENST00000399429 BSDC1Q9NW68 430 aaPredicted RBP9.98□□□□□ -0.81
COL28A1-201ENST00000399429 ADAM22Q9P0K1 906 aa9.98□□□□□ -0.81
COL28A1-201ENST00000399429 KITP10721 976 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 TNFRSF8P28908 595 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 DYNLL1P63167 89 aaKnown RBP9.97□□□□□ -0.81
COL28A1-201ENST00000399429 OVGP1Q12889 678 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 PDXDC2PQ6P474 469 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 ISLR2Q6UXK2 745 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 GUF1Q8N442 669 aaKnown RBP9.97□□□□□ -0.81
COL28A1-201ENST00000399429 SIKE1Q9BRV8 207 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 EDEM3Q9BZQ6 932 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 CPVLQ9H3G5 476 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 EBF2Q9HAK2 575 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 PXDNLA1KZ92 1463 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 GOLGA8RI6L899 631 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 CHMP2AO43633 222 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 ATP6V1G1O75348 118 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 SPRED3Q2MJR0 410 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 RBM41Q96IZ5 413 aaKnown RBP9.97□□□□□ -0.81
COL28A1-201ENST00000399429 THTPAQ9BU02 230 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 IFT122Q9HBG6 1241 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 CYP39A1Q9NYL5 469 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 ANAPC4Q9UJX5 808 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 PHTF1Q9UMS5 762 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 OVOS2A0A0G2JMS6 1433 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 SETBP1Q9Y6X0 1596 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 FAM47DPA6NHR8 397 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 H7C1W4 665 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 O00370 1275 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 ZNF263O14978 683 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 EPHB6O15197 1021 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 BAG3O95817 575 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 DLATP10515 647 aaKnown RBP9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms