RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 PNKPQ96T60 521 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 NUF2Q9BZD4 464 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 INO80BQ9C086 356 aaPredicted RBP11.58□□□□□ -0.56
CCDC40-204ENST00000397545 SH3GLB2Q9NR46 395 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 SLIT2O94813 1529 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 EIF3BP55884 814 aaKnown RBP11.57□□□□□ -0.56
CCDC40-204ENST00000397545 RWDD2BP57060 319 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 DRAP1Q14919 205 aaPredicted RBP11.57□□□□□ -0.56
CCDC40-204ENST00000397545 SEPT2Q15019 361 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 MTERF2Q49AM1 385 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 C6orf118Q5T5N4 469 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 CCNI2Q6ZMN8 369 aaPredicted RBP11.57□□□□□ -0.56
CCDC40-204ENST00000397545 NLRP14Q86W24 1093 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 PASD1Q8IV76 773 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 SUPT20HQ8NEM7 779 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 GSDMBQ8TAX9 411 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 CCT6BQ92526 530 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 LBHD1Q9BQE6 289 aaPredicted RBP11.57□□□□□ -0.56
CCDC40-204ENST00000397545 RIOK1Q9BRS2 568 aaKnown RBP11.57□□□□□ -0.56
CCDC40-204ENST00000397545 ACTR5Q9H9F9 607 aaPredicted RBP11.57□□□□□ -0.56
CCDC40-204ENST00000397545 NARFQ9UHQ1 456 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 NUP98P52948 1817 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 NPHP3-ACAD11A0A0J9YXS1 232 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 CHUKO15111 745 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 C21orf2O43822 256 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 SMIM24O75264 130 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 SEC24CP53992 1094 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 SLC12A2P55011 1212 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 ARHGAP4P98171 946 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 EZH2Q15910 746 aaKnown RBP11.57□□□□□ -0.56
CCDC40-204ENST00000397545 BARGINQ6ZT62 677 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 DDX42Q86XP3 938 aaKnown RBP eCLIP11.57□□□□□ -0.56
CCDC40-204ENST00000397545 ZBTB8OSQ8IWT0 167 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 NME8Q8N427 588 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 PITPNM3Q9BZ71 974 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 TAF1DQ9H5J8 278 aaPredicted RBP11.57□□□□□ -0.56
CCDC40-204ENST00000397545 L2HGDHQ9H9P8 463 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 SMYD2Q9NRG4 433 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 PCDHA6Q9UN73 950 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 PCDHA8Q9Y5H6 950 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 DUSP10Q9Y6W6 482 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 PPEF1O14829 653 aaPredicted RBP11.57□□□□□ -0.56
CCDC40-204ENST00000397545 TNNC2P02585 160 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 ACTN1P12814 892 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 HSPA6P17066 643 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 MSH2P43246 934 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 STAT2P52630 851 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 SCARA5Q6ZMJ2 495 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 KCNV2Q8TDN2 545 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 FAM149B1Q96BN6 582 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 PI4KBQ9UBF8 816 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 CNOT8Q9UFF9 292 aaKnown RBP11.57□□□□□ -0.56
CCDC40-204ENST00000397545 COL14A1Q05707 1796 aaKnown RBP11.57□□□□□ -0.56
CCDC40-204ENST00000397545 ATRNO75882 1429 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 MYO5AQ9Y4I1 1855 aaKnown RBP11.57□□□□□ -0.56
CCDC40-204ENST00000397545 GOLGA8MH3BSY2 632 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 SART1O43290 800 aaKnown RBP11.57□□□□□ -0.56
CCDC40-204ENST00000397545 RPS6KA4O75676 772 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 BBOX1O75936 387 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 TFRCP02786 760 aaKnown RBP11.57□□□□□ -0.56
CCDC40-204ENST00000397545 MT-ND3P03897 115 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 PDE6BP35913 854 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 CARSP49589 748 aaKnown RBP11.57□□□□□ -0.56
CCDC40-204ENST00000397545 ERFP50548 548 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 TOB1P50616 345 aaPredicted RBP11.57□□□□□ -0.56
CCDC40-204ENST00000397545 PPP2R5AQ15172 486 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 VPS72Q15906 364 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 SESTD1Q86VW0 696 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 RPUSD2Q8IZ73 545 aaKnown RBP11.57□□□□□ -0.56
CCDC40-204ENST00000397545 NSUN4Q96CB9 384 aaKnown RBP11.57□□□□□ -0.56
CCDC40-204ENST00000397545 MAP3K14Q99558 947 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 PHF20Q9BVI0 1012 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 CD209Q9NNX6 404 aa11.57□□□□□ -0.56
CCDC40-204ENST00000397545 ZBTB5O15062 677 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 FTLP02792 175 aaPredicted RBP11.56□□□□□ -0.56
CCDC40-204ENST00000397545 IFRD2Q12894 506 aaPredicted RBP11.56□□□□□ -0.56
CCDC40-204ENST00000397545 GRM4Q14833 912 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 KNOP1Q1ED39 458 aaKnown RBP11.56□□□□□ -0.56
CCDC40-204ENST00000397545 DNAJC24Q6P3W2 148 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 ARMC9Q7Z3E5 817 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 AMIGO3Q86WK7 504 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 HIPK4Q8NE63 616 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 SLC7A3Q8WY07 619 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 ATP6V1G3Q96LB4 118 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 RBM12Q9NTZ6 932 aaKnown RBP11.56□□□□□ -0.56
CCDC40-204ENST00000397545 NOC2LQ9Y3T9 749 aaKnown RBP11.56□□□□□ -0.56
CCDC40-204ENST00000397545 USH1CQ9Y6N9 552 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 SPEF2Q9C093 1822 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 GMNNO75496 209 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 PLEKP08567 350 aaPredicted RBP11.56□□□□□ -0.56
CCDC40-204ENST00000397545 PPM1FP49593 454 aaPredicted RBP11.56□□□□□ -0.56
CCDC40-204ENST00000397545 PPP2R2AP63151 447 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 GRAPQ13588 217 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 ZBTB33Q86T24 672 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 TRIM50Q86XT4 487 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 MCF2L2Q86YR7 1114 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 PROM2Q8N271 834 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 RNF169Q8NCN4 708 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 GRAPLQ8TC17 118 aaPredicted RBP11.56□□□□□ -0.56
CCDC40-204ENST00000397545 RNF25Q96BH1 459 aaPredicted RBP11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms