RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 FAM47EQ6ZV65 393 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 BTN2A1Q7KYR7 527 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 EPM2AIP1Q7L775 607 aaPredicted RBP10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 DHX38Q92620 1227 aaKnown RBP10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 VPS39Q96JC1 886 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 ATP6V1G3Q96LB4 118 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 CYTH2Q99418 400 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 SLC12A6Q9UHW9 1150 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 CHEK2O96017 543 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 KRT14P02533 472 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 NR3C1P04150 777 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 KRT7P08729 469 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 PSMA2P25787 234 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 CHRNA3P32297 505 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 MCAMP43121 646 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 MTERF2Q49AM1 385 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 FAM83BQ5T0W9 1011 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 METTL23Q86XA0 190 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 TBC1D10CQ8IV04 446 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 TTLL11Q8NHH1 800 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 EDEM3Q9BZQ6 932 aa10.96□□□□□ -0.66
LIMCH1-203ENST00000396595 USP27XA6NNY8 438 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 HAUS5O94927 633 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 PYGBP11216 843 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 C7orf31Q8N865 590 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 GIPC2Q8TF65 315 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 ZFP69BQ9UJL9 534 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 APOBEC2Q9Y235 224 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 FIS1Q9Y3D6 152 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 TYW5A2RUC4 315 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 GDF11O95390 407 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 DHX40Q8IX18 779 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 MB21D2Q8IYB1 491 aaPredicted RBP10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 TMEM35BQ8NCS4 154 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 FAF2Q96CS3 445 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 KRT82Q9NSB4 513 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 USP21Q9UK80 565 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 TTC26A0AVF1 554 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 ARHGEF37A1IGU5 675 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 SLC4A1P02730 911 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 GFPT1Q06210 699 aaPredicted RBP10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 KCNH2Q12809 1159 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 MRPL28Q13084 256 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 CTTNQ14247 550 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 ERFEQ4G0M1 354 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 TRIM67Q6ZTA4 783 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 KIAA1586Q9HCI6 787 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 ZDHHC9Q9Y397 364 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 METP08581 1390 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 GOLGA8IPA6NC78 632 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 GOLGA8JA6NMD2 632 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 K7ERI5 159 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 PDHA1P08559 390 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 OCRLQ01968 901 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 NFRKBQ6P4R8 1299 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 GSPT2Q8IYD1 628 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 RAD54LQ92698 747 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 LRRC37BQ96QE4 947 aa10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 CPSF3Q9UKF6 684 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-203ENST00000396595 H0Y3Z8 333 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 CARSP49589 748 aaKnown RBP10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 ARMCX2Q7L311 632 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 SIX6OS1Q8N1H7 587 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 GUF1Q8N442 669 aaKnown RBP10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 XXYLT1Q8NBI6 393 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 MSTO1Q9BUK6 570 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 NVLO15381 856 aaKnown RBP10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 CASP1P29466 404 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 CCNA1P78396 465 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 NAA30Q147X3 362 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 SFR1Q86XK3 245 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 CHMP6Q96FZ7 201 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 PPME1Q9Y570 386 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 PRDM15P57071 1507 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 WDR64B1ANS9 1081 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 BRAFP15056 766 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 TAC1P20366 129 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 FOXP4Q8IVH2 680 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 GRAMD1AQ96CP6 724 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 ZCCHC17Q9NP64 241 aaKnown RBP10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 MRPL40Q9NQ50 206 aaKnown RBP10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 FAM8A1Q9UBU6 413 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 ZNF229Q9UJW7 825 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 MAGI3Q5TCQ9 1506 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 MBD5Q9P267 1494 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 ERBB3P21860 1342 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 ANKARQ7Z5J8 1434 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 KPNA7A9QM74 516 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 RHOBTB1O94844 696 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 APBA3O96018 575 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 ALX1Q15699 326 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 PPP1R18Q6NYC8 613 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 PDXDC2PQ6P474 469 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 ZWILCHQ9H900 591 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 RPF1Q9H9Y2 349 aaKnown RBP10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 STMN3Q9NZ72 180 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 TRPC5Q9UL62 973 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 NEDD4P46934 1319 aa10.94□□□□□ -0.66
LIMCH1-203ENST00000396595 CLRN2A0PK11 232 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms