RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 CABS1Q96KC9 395 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 SYT11Q9BT88 431 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 AMNQ9BXJ7 453 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 STK33Q9BYT3 514 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 VCPKMTQ9H867 229 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 OLFML3Q9NRN5 406 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 KIF13BQ9NQT8 1826 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 GREB1LQ9C091 1923 aaPredicted RBP13.8□□□□□ -0.2
SHMT1-205ENST00000395684 SPDYE3A6NKU9 549 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 ZBTB39O15060 712 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 HOXA13P31271 388 aaPredicted RBP13.8□□□□□ -0.2
SHMT1-205ENST00000395684 PLS1Q14651 629 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 DOK7Q18PE1 504 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 SPRED3Q2MJR0 410 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 KRT71Q3SY84 523 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 CBWD6Q4V339 395 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 CBWD3Q5JTY5 395 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 CBWD5Q5RIA9 395 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 CCDC13Q8IYE1 715 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 ARHGEF26Q96DR7 871 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 NGLY1Q96IV0 654 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 TXLNGYQ9BZA5 131 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 ERVK-5Q9HDB9 667 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 FAM114A2Q9NRY5 505 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 TAS2R14Q9NYV8 317 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 DNAJC12Q9UKB3 198 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 ATP8A1Q9Y2Q0 1164 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 OPLAHO14841 1288 aa13.79□□□□□ -0.2
SHMT1-205ENST00000395684 TMEM253P0C7T8 217 aa13.79□□□□□ -0.2
SHMT1-205ENST00000395684 PSMC2P35998 433 aaKnown RBP13.79□□□□□ -0.2
SHMT1-205ENST00000395684 FMO5P49326 533 aa13.79□□□□□ -0.2
SHMT1-205ENST00000395684 TCP10Q12799 353 aa13.79□□□□□ -0.2
SHMT1-205ENST00000395684 PRPF4BQ13523 1007 aaKnown RBP13.79□□□□□ -0.2
SHMT1-205ENST00000395684 CTTNQ14247 550 aaKnown RBP13.79□□□□□ -0.2
SHMT1-205ENST00000395684 PALB2Q86YC2 1186 aa13.79□□□□□ -0.2
SHMT1-205ENST00000395684 RFFLQ8WZ73 363 aa13.79□□□□□ -0.2
SHMT1-205ENST00000395684 CRAMP1Q96RY5 1269 aa13.79□□□□□ -0.2
SHMT1-205ENST00000395684 POLR3CQ9BUI4 534 aaPredicted RBP13.79□□□□□ -0.2
SHMT1-205ENST00000395684 OSBPL7Q9BZF2 842 aa13.79□□□□□ -0.2
SHMT1-205ENST00000395684 NYAP2Q9P242 653 aa13.79□□□□□ -0.2
SHMT1-205ENST00000395684 PCDHAC2Q9Y5I4 1007 aa13.79□□□□□ -0.2
SHMT1-205ENST00000395684 TAF1LQ8IZX4 1826 aa13.79□□□□□ -0.2
SHMT1-205ENST00000395684 PPFIA2O75334 1257 aa13.79□□□□□ -0.2
SHMT1-205ENST00000395684 PAEPP09466 180 aa13.79□□□□□ -0.2
SHMT1-205ENST00000395684 LMNB1P20700 586 aa13.79□□□□□ -0.2
SHMT1-205ENST00000395684 CIITAP33076 1130 aa13.79□□□□□ -0.2
SHMT1-205ENST00000395684 PTENP60484 403 aa13.79□□□□□ -0.2
SHMT1-205ENST00000395684 ZNF211Q13398 564 aaPredicted RBP13.79□□□□□ -0.2
SHMT1-205ENST00000395684 BYSLQ13895 437 aaKnown RBP13.79□□□□□ -0.2
SHMT1-205ENST00000395684 CERKLQ49MI3 558 aaPredicted RBP13.79□□□□□ -0.2
SHMT1-205ENST00000395684 MYCT1Q8N699 235 aa13.79□□□□□ -0.2
SHMT1-205ENST00000395684 GLG1Q92896 1179 aa13.79□□□□□ -0.2
SHMT1-205ENST00000395684 HSD17B14Q9BPX1 270 aa13.79□□□□□ -0.2
SHMT1-205ENST00000395684 NCANO14594 1321 aa13.79□□□□□ -0.2
SHMT1-205ENST00000395684 DDTLA6NHG4 134 aaPredicted RBP13.78□□□□□ -0.2
SHMT1-205ENST00000395684 F5H6K3 240 aa13.78□□□□□ -0.2
SHMT1-205ENST00000395684 USP8P40818 1118 aa13.78□□□□□ -0.2
SHMT1-205ENST00000395684 KLRC3Q07444 240 aa13.78□□□□□ -0.2
SHMT1-205ENST00000395684 CHADLQ6NUI6 762 aa13.78□□□□□ -0.2
SHMT1-205ENST00000395684 FBXO11Q86XK2 927 aa13.78□□□□□ -0.2
SHMT1-205ENST00000395684 SP8Q8IXZ3 490 aa13.78□□□□□ -0.2
SHMT1-205ENST00000395684 C3orf20Q8ND61 904 aa13.78□□□□□ -0.2
SHMT1-205ENST00000395684 FMO2Q99518 471 aa13.78□□□□□ -0.2
SHMT1-205ENST00000395684 THAP2Q9H0W7 228 aa13.78□□□□□ -0.2
SHMT1-205ENST00000395684 EPB41L4BQ9H329 900 aa13.78□□□□□ -0.2
SHMT1-205ENST00000395684 YY1AP1Q9H869 796 aa13.78□□□□□ -0.2
SHMT1-205ENST00000395684 COG5Q9UP83 839 aa13.78□□□□□ -0.2
SHMT1-205ENST00000395684 DNM1LO00429 736 aa13.78□□□□□ -0.2
SHMT1-205ENST00000395684 SLITRK3O94933 977 aa13.78□□□□□ -0.2
SHMT1-205ENST00000395684 SHBGP04278 402 aa13.78□□□□□ -0.2
SHMT1-205ENST00000395684 DDR1Q08345 913 aa13.78□□□□□ -0.2
SHMT1-205ENST00000395684 DUPD1Q68J44 220 aa13.78□□□□□ -0.2
SHMT1-205ENST00000395684 HHIPL2Q6UWX4 724 aa13.78□□□□□ -0.2
SHMT1-205ENST00000395684 C1orf186Q6ZWK4 172 aa13.78□□□□□ -0.2
SHMT1-205ENST00000395684 MDM1Q8TC05 714 aa13.78□□□□□ -0.2
SHMT1-205ENST00000395684 CTNNBL1Q8WYA6 563 aaPredicted RBP13.78□□□□□ -0.2
SHMT1-205ENST00000395684 ALG3Q92685 438 aa13.78□□□□□ -0.2
SHMT1-205ENST00000395684 TEKT1Q969V4 418 aa13.78□□□□□ -0.2
SHMT1-205ENST00000395684 SEC16BQ96JE7 1060 aa13.78□□□□□ -0.2
SHMT1-205ENST00000395684 FIZ1Q96SL8 496 aa13.78□□□□□ -0.2
SHMT1-205ENST00000395684 ZC3H12CQ9C0D7 883 aaKnown RBP13.78□□□□□ -0.2
SHMT1-205ENST00000395684 ZDHHC18Q9NUE0 388 aa13.78□□□□□ -0.2
SHMT1-205ENST00000395684 ADAMTSL1Q8N6G6 1762 aa13.78□□□□□ -0.2
SHMT1-205ENST00000395684 C5orf60A6NFR6 353 aa13.77□□□□□ -0.2
SHMT1-205ENST00000395684 PHF20L1A8MW92 1017 aa13.77□□□□□ -0.2
SHMT1-205ENST00000395684 PPEF1O14829 653 aaPredicted RBP13.77□□□□□ -0.2
SHMT1-205ENST00000395684 EIF3DO15371 548 aaKnown RBP eCLIP13.77□□□□□ -0.2
SHMT1-205ENST00000395684 CAND2O75155 1236 aa13.77□□□□□ -0.2
SHMT1-205ENST00000395684 RASSF9O75901 435 aa13.77□□□□□ -0.2
SHMT1-205ENST00000395684 FAM13AO94988 1023 aa13.77□□□□□ -0.2
SHMT1-205ENST00000395684 FOSP01100 380 aaPredicted RBP13.77□□□□□ -0.2
SHMT1-205ENST00000395684 TRIM49P0CI25 452 aa13.77□□□□□ -0.2
SHMT1-205ENST00000395684 TRIM49CP0CI26 452 aa13.77□□□□□ -0.2
SHMT1-205ENST00000395684 MMP14P50281 582 aa13.77□□□□□ -0.2
SHMT1-205ENST00000395684 SMTNP53814 917 aa13.77□□□□□ -0.2
SHMT1-205ENST00000395684 DR1Q01658 176 aa13.77□□□□□ -0.2
SHMT1-205ENST00000395684 TLCD1Q96CP7 247 aa13.77□□□□□ -0.2
SHMT1-205ENST00000395684 PSMD1Q99460 953 aa13.77□□□□□ -0.2
SHMT1-205ENST00000395684 ERP44Q9BS26 406 aa13.77□□□□□ -0.2
SHMT1-205ENST00000395684 CARD9Q9H257 536 aa13.77□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms