RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 SCLT1Q96NL6 688 aa24.18■■□□□ 1.46
CLN3-207ENST00000395653 USP28Q96RU2 1077 aa24.18■■□□□ 1.46
CLN3-207ENST00000395653 DDX19AQ9NUU7 478 aaKnown RBP24.18■■□□□ 1.46
CLN3-207ENST00000395653 COL4A3BPQ9Y5P4 624 aa24.18■■□□□ 1.46
CLN3-207ENST00000395653 LOXHD1Q8IVV2 1947 aa24.18■■□□□ 1.46
CLN3-207ENST00000395653 GPR182O15218 404 aa24.18■■□□□ 1.46
CLN3-207ENST00000395653 DARSP14868 501 aaKnown RBP24.18■■□□□ 1.46
CLN3-207ENST00000395653 LONP1P36776 959 aaKnown RBP24.18■■□□□ 1.46
CLN3-207ENST00000395653 HYIQ5T013 277 aa24.18■■□□□ 1.46
CLN3-207ENST00000395653 FAM228AQ86W67 206 aa24.18■■□□□ 1.46
CLN3-207ENST00000395653 KCTD17Q8N5Z5 321 aa24.18■■□□□ 1.46
CLN3-207ENST00000395653 TMEM143Q96AN5 459 aa24.18■■□□□ 1.46
CLN3-207ENST00000395653 ERVK-5Q9HDB9 667 aa24.18■■□□□ 1.46
CLN3-207ENST00000395653 MSRAQ9UJ68 235 aa24.18■■□□□ 1.46
CLN3-207ENST00000395653 PCDHA11Q9Y5I1 949 aa24.18■■□□□ 1.46
CLN3-207ENST00000395653 PTPRSQ13332 1948 aa24.17■■□□□ 1.46
CLN3-207ENST00000395653 TMEM265A0A087WTH1 108 aa24.17■■□□□ 1.46
CLN3-207ENST00000395653 SLC26A4O43511 780 aa24.17■■□□□ 1.46
CLN3-207ENST00000395653 PBX2P40425 430 aa24.17■■□□□ 1.46
CLN3-207ENST00000395653 NFX1Q12986 1120 aaKnown RBP24.17■■□□□ 1.46
CLN3-207ENST00000395653 PRPF31Q8WWY3 499 aaKnown RBP24.17■■□□□ 1.46
CLN3-207ENST00000395653 ZNF668Q96K58 619 aaPredicted RBP24.17■■□□□ 1.46
CLN3-207ENST00000395653 GCOM2Q9BZD3 368 aaPredicted RBP24.17■■□□□ 1.46
CLN3-207ENST00000395653 ST3GAL5Q9UNP4 418 aa24.17■■□□□ 1.46
CLN3-207ENST00000395653 A0A087WZ62 844 aa24.16■■□□□ 1.46
CLN3-207ENST00000395653 ARHGEF35A5YM69 484 aa24.16■■□□□ 1.46
CLN3-207ENST00000395653 ASAP2O43150 1006 aa24.16■■□□□ 1.46
CLN3-207ENST00000395653 USO1O60763 962 aaKnown RBP24.16■■□□□ 1.46
CLN3-207ENST00000395653 GJB5O95377 273 aa24.16■■□□□ 1.46
CLN3-207ENST00000395653 NASPP49321 788 aaPredicted RBP24.16■■□□□ 1.46
CLN3-207ENST00000395653 CEBPZQ03701 1054 aaKnown RBP24.16■■□□□ 1.46
CLN3-207ENST00000395653 PKP1Q13835 747 aa24.16■■□□□ 1.46
CLN3-207ENST00000395653 KSR1Q8IVT5 923 aa24.16■■□□□ 1.46
CLN3-207ENST00000395653 MYOCDQ8IZQ8 938 aa24.16■■□□□ 1.46
CLN3-207ENST00000395653 MCPH1Q8NEM0 835 aa24.16■■□□□ 1.46
CLN3-207ENST00000395653 ZNF396Q96N95 335 aaPredicted RBP24.16■■□□□ 1.46
CLN3-207ENST00000395653 FDXACB1Q9BRP7 624 aaPredicted RBP24.16■■□□□ 1.46
CLN3-207ENST00000395653 NT5C3AQ9H0P0 336 aa24.16■■□□□ 1.46
CLN3-207ENST00000395653 DNM3Q9UQ16 869 aa24.16■■□□□ 1.46
CLN3-207ENST00000395653 MYH15Q9Y2K3 1946 aa24.16■■□□□ 1.46
CLN3-207ENST00000395653 ENPP3O14638 875 aa24.15■■□□□ 1.46
CLN3-207ENST00000395653 RABGGTBP53611 331 aa24.15■■□□□ 1.46
CLN3-207ENST00000395653 LAMTOR4Q0VGL1 99 aa24.15■■□□□ 1.46
CLN3-207ENST00000395653 MXD4Q14582 209 aaPredicted RBP24.15■■□□□ 1.46
CLN3-207ENST00000395653 SLC39A14Q15043 492 aa24.15■■□□□ 1.46
CLN3-207ENST00000395653 ZNF697Q5TEC3 545 aa24.15■■□□□ 1.46
CLN3-207ENST00000395653 FOXD4L5Q5VV16 416 aaPredicted RBP24.15■■□□□ 1.46
CLN3-207ENST00000395653 PADI6Q6TGC4 694 aa24.15■■□□□ 1.46
CLN3-207ENST00000395653 LINC01599Q8WXQ3 324 aa24.15■■□□□ 1.46
CLN3-207ENST00000395653 FOXD4L4Q8WXT5 416 aaPredicted RBP24.15■■□□□ 1.46
CLN3-207ENST00000395653 TIFAQ96CG3 184 aa24.15■■□□□ 1.46
CLN3-207ENST00000395653 NLRP4Q96MN2 994 aa24.15■■□□□ 1.46
CLN3-207ENST00000395653 INO80BQ9C086 356 aaPredicted RBP24.15■■□□□ 1.46
CLN3-207ENST00000395653 TSPYL2Q9H2G4 693 aaPredicted RBP24.15■■□□□ 1.46
CLN3-207ENST00000395653 BHMT2Q9H2M3 363 aa24.15■■□□□ 1.46
CLN3-207ENST00000395653 TMX1Q9H3N1 280 aa24.15■■□□□ 1.46
CLN3-207ENST00000395653 FBXO2Q9UK22 296 aaPredicted RBP24.15■■□□□ 1.46
CLN3-207ENST00000395653 SRPRBQ9Y5M8 271 aaKnown RBP24.15■■□□□ 1.46
CLN3-207ENST00000395653 GBF1Q92538 1859 aa24.14■■□□□ 1.46
CLN3-207ENST00000395653 EYA4O95677 639 aa24.14■■□□□ 1.45
CLN3-207ENST00000395653 ARL2P36404 184 aa24.14■■□□□ 1.45
CLN3-207ENST00000395653 UBA7P41226 1012 aa24.14■■□□□ 1.45
CLN3-207ENST00000395653 GRIN1Q05586 938 aa24.14■■□□□ 1.45
CLN3-207ENST00000395653 TMCO2Q7Z6W1 182 aaPredicted RBP24.14■■□□□ 1.45
CLN3-207ENST00000395653 CABP7Q86V35 215 aa24.14■■□□□ 1.45
CLN3-207ENST00000395653 TOP1MTQ969P6 601 aa24.14■■□□□ 1.45
CLN3-207ENST00000395653 CDK5RAP3Q96JB5 506 aa24.14■■□□□ 1.45
CLN3-207ENST00000395653 PNMA5Q96PV4 448 aa24.14■■□□□ 1.45
CLN3-207ENST00000395653 IFT122Q9HBG6 1241 aa24.14■■□□□ 1.45
CLN3-207ENST00000395653 YBX2Q9Y2T7 364 aaKnown RBP24.14■■□□□ 1.45
CLN3-207ENST00000395653 E9PMD0 336 aa24.13■■□□□ 1.45
CLN3-207ENST00000395653 CYP11B2P19099 503 aa24.13■■□□□ 1.45
CLN3-207ENST00000395653 MARCKSP29966 332 aaPredicted RBP24.13■■□□□ 1.45
CLN3-207ENST00000395653 RTN4RL1Q86UN2 441 aaPredicted RBP24.13■■□□□ 1.45
CLN3-207ENST00000395653 ZBED2Q9BTP6 218 aa24.13■■□□□ 1.45
CLN3-207ENST00000395653 TLL1O43897 1013 aa24.12■■□□□ 1.45
CLN3-207ENST00000395653 BRD1O95696 1058 aa24.12■■□□□ 1.45
CLN3-207ENST00000395653 SFPQP23246 707 aaKnown RBP eCLIP24.12■■□□□ 1.45
CLN3-207ENST00000395653 GRB10Q13322 594 aa24.12■■□□□ 1.45
CLN3-207ENST00000395653 ZRSR1Q15695 479 aaKnown RBP24.12■■□□□ 1.45
CLN3-207ENST00000395653 TMEM119Q4V9L6 283 aa24.12■■□□□ 1.45
CLN3-207ENST00000395653 CALML4Q96GE6 196 aa24.12■■□□□ 1.45
CLN3-207ENST00000395653 MYOGP15173 224 aa24.11■■□□□ 1.45
CLN3-207ENST00000395653 POU5F1BQ06416 359 aa24.11■■□□□ 1.45
CLN3-207ENST00000395653 TFDP1Q14186 410 aa24.11■■□□□ 1.45
CLN3-207ENST00000395653 STK38Q15208 465 aa24.11■■□□□ 1.45
CLN3-207ENST00000395653 ATL3Q6DD88 541 aa24.11■■□□□ 1.45
CLN3-207ENST00000395653 KCNK18Q7Z418 384 aa24.11■■□□□ 1.45
CLN3-207ENST00000395653 SRGAP1Q7Z6B7 1085 aa24.11■■□□□ 1.45
CLN3-207ENST00000395653 RNF149Q8NC42 400 aa24.11■■□□□ 1.45
CLN3-207ENST00000395653 LINC00301Q8NCQ3 95 aa24.11■■□□□ 1.45
CLN3-207ENST00000395653 RAD9AQ99638 391 aa24.11■■□□□ 1.45
CLN3-207ENST00000395653 CSRNP2Q9H175 543 aa24.11■■□□□ 1.45
CLN3-207ENST00000395653 POLR3FQ9H1D9 316 aaPredicted RBP24.11■■□□□ 1.45
CLN3-207ENST00000395653 NKX2-4Q9H2Z4 354 aa24.11■■□□□ 1.45
CLN3-207ENST00000395653 SLC28A3Q9HAS3 691 aa24.11■■□□□ 1.45
CLN3-207ENST00000395653 RGS18Q9NS28 235 aa24.11■■□□□ 1.45
CLN3-207ENST00000395653 DENND3A2RUS2 1198 aa24.1■■□□□ 1.45
CLN3-207ENST00000395653 MGEA5O60502 916 aa24.1■■□□□ 1.45
CLN3-207ENST00000395653 YEATS4O95619 227 aa24.1■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms