RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 CARD9Q9H257 536 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 TMEM206Q9H813 350 aa12.63□□□□□ -0.39
SYNPO-202ENST00000394243 TLR3O15455 904 aaKnown RBP12.62□□□□□ -0.39
SYNPO-202ENST00000394243 SEC24CP53992 1094 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 GPC5P78333 572 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 KCNA1Q09470 495 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 E4F1Q66K89 784 aaPredicted RBP12.62□□□□□ -0.39
SYNPO-202ENST00000394243 RUBCNQ92622 972 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 SNF8Q96H20 258 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 SLITRK6Q9H5Y7 841 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 SLC52A2Q9HAB3 445 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 NXF1Q9UBU9 619 aaKnown RBP12.62□□□□□ -0.39
SYNPO-202ENST00000394243 CCPG1Q9ULG6 757 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 PRCPP42785 496 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 CTSWP56202 376 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 CNBD1Q8NA66 436 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 DHX38Q92620 1227 aaKnown RBP12.62□□□□□ -0.39
SYNPO-202ENST00000394243 FAM8A1Q9UBU6 413 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 CNOT8Q9UFF9 292 aaKnown RBP12.62□□□□□ -0.39
SYNPO-202ENST00000394243 DNAJC12Q9UKB3 198 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 TTC26A0AVF1 554 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 MLH1P40692 756 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 BBS5Q8N3I7 341 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 SH3GL1Q99961 368 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 CD109Q6YHK3 1445 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 SH2B2O14492 632 aaPredicted RBP12.62□□□□□ -0.39
SYNPO-202ENST00000394243 SLC17A8Q8NDX2 589 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 CYGBQ8WWM9 190 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 EME1Q96AY2 570 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 ERP27Q96DN0 273 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 PPP1R36Q96LQ0 422 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 SEPT9Q9UHD8 586 aaPredicted RBP12.62□□□□□ -0.39
SYNPO-202ENST00000394243 CUL7Q14999 1698 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 GCP02774 474 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 ATP6V1B1P15313 513 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 HOMEZQ8IX15 550 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 VPS39Q96JC1 886 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 EDEM3Q9BZQ6 932 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 DBR1Q9UK59 544 aaKnown RBP12.62□□□□□ -0.39
SYNPO-202ENST00000394243 CLEC11AQ9Y240 323 aa12.62□□□□□ -0.39
SYNPO-202ENST00000394243 ATP6V1E1P36543 226 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 GYG1P46976 350 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 SF3B3Q15393 1217 aaKnown RBP12.61□□□□□ -0.39
SYNPO-202ENST00000394243 DDX42Q86XP3 938 aaKnown RBP eCLIP12.61□□□□□ -0.39
SYNPO-202ENST00000394243 GJB4Q9NTQ9 266 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 SEPT3Q9UH03 358 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 SNUPNO95149 360 aaKnown RBP12.61□□□□□ -0.39
SYNPO-202ENST00000394243 AGTP01019 485 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 PRR29P0C7W0 189 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 ADORA1P30542 326 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 MECOMQ03112 1051 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 NSUN2Q08J23 767 aaKnown RBP eCLIP12.61□□□□□ -0.39
SYNPO-202ENST00000394243 TRIP10Q15642 601 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 CCNI2Q6ZMN8 369 aaPredicted RBP12.61□□□□□ -0.39
SYNPO-202ENST00000394243 PNMA2Q9UL42 364 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 COPG1Q9Y678 874 aaKnown RBP12.61□□□□□ -0.39
SYNPO-202ENST00000394243 GOLGA8RI6L899 631 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 ZNF18P17022 549 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 MARK3P27448 753 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 EXOC8Q8IYI6 725 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 KIRREL3Q8IZU9 778 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 C7orf31Q8N865 590 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 PBXIP1Q96AQ6 731 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 RBM41Q96IZ5 413 aaKnown RBP12.61□□□□□ -0.39
SYNPO-202ENST00000394243 XPO6Q96QU8 1125 aaKnown RBP12.61□□□□□ -0.39
SYNPO-202ENST00000394243 ZNF577Q9BSK1 485 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 ARHGEF12Q9NZN5 1544 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 TFAMQ00059 246 aaKnown RBP12.61□□□□□ -0.39
SYNPO-202ENST00000394243 UBE3CQ15386 1083 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 TRIM16LQ309B1 348 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 PI4K2BQ8TCG2 481 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 PARVGQ9HBI0 331 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 CCZ1BP86790 482 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 CCZ1P86791 482 aaPredicted RBP12.61□□□□□ -0.39
SYNPO-202ENST00000394243 PPP4R3CPQ6ZMV5 832 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 ALKBH8Q96BT7 664 aaKnown RBP12.61□□□□□ -0.39
SYNPO-202ENST00000394243 SYCP2Q9BX26 1530 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 PYGLP06737 847 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 GNAT1P11488 350 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 PCP11498 1178 aaKnown RBP12.61□□□□□ -0.39
SYNPO-202ENST00000394243 VCPP55072 806 aaKnown RBP12.61□□□□□ -0.39
SYNPO-202ENST00000394243 CCDC24Q8N4L8 307 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 TRABDQ9H4I3 376 aa12.61□□□□□ -0.39
SYNPO-202ENST00000394243 IFNAR1P17181 557 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 COPB2P35606 906 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 UBXN2AP68543 259 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 DNAL1Q4LDG9 190 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 RPS6KC1Q96S38 1066 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 CNGB3Q9NQW8 809 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 UHRF1BP1Q6BDS2 1440 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 VHLP40337 213 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 ERICH1Q86X53 443 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 OR2W6PQ8NHA6 318 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 RNF25Q96BH1 459 aaPredicted RBP12.6□□□□□ -0.39
SYNPO-202ENST00000394243 SGSM3Q96HU1 749 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 ATXN3P54252 364 aaPredicted RBP12.6□□□□□ -0.39
SYNPO-202ENST00000394243 POU5F1BQ06416 359 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 TAGAPQ8N103 731 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 DDHD1Q8NEL9 900 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 ASPSCR1Q9BZE9 553 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 109.1 ms