RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 ERP44Q9BS26 406 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 TMEM109Q9BVC6 243 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 AMNQ9BXJ7 453 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 KDM4CQ9H3R0 1056 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 CENPHQ9H3R5 247 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 KLC4Q9NSK0 619 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 KCND2Q9NZV8 630 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 PARP2Q9UGN5 583 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 POLLQ9UGP5 575 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 CNOT7Q9UIV1 285 aaKnown RBP10.85□□□□□ -0.67
COL17A1-203ENST00000393211 NOVA2Q9UNW9 492 aaKnown RBP10.85□□□□□ -0.67
COL17A1-203ENST00000393211 RABGAP1Q9Y3P9 1069 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 PFASO15067 1338 aa10.85□□□□□ -0.67
COL17A1-203ENST00000393211 ANKRD62A6NC57 917 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 SPDYE3A6NKU9 549 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 CCDC169A6NNP5 214 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 TGFB1I1O43294 461 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 EVI5O60447 810 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 BUB1BO60566 1050 aaPredicted RBP10.84□□□□□ -0.67
COL17A1-203ENST00000393211 GCNT3O95395 438 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 FGGP02679 453 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 ITGA4P13612 1032 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 STAT3P40763 770 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 PSMC6P62333 389 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 DR1Q01658 176 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 KRT71Q3SY84 523 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 PRR16Q569H4 304 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 SP8Q8IXZ3 490 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 FAM186BQ8IYM0 893 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 OLIG1Q8TAK6 271 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 LNX1Q8TBB1 728 aaPredicted RBP10.84□□□□□ -0.67
COL17A1-203ENST00000393211 SLC35G2Q8TBE7 412 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 RAPGEF5Q92565 580 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 STMN4Q9H169 189 aaPredicted RBP10.84□□□□□ -0.67
COL17A1-203ENST00000393211 PABPC3Q9H361 631 aaKnown RBP10.84□□□□□ -0.67
COL17A1-203ENST00000393211 DDX4Q9NQI0 724 aaKnown RBP10.84□□□□□ -0.67
COL17A1-203ENST00000393211 USP40Q9NVE5 1235 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 VAV3Q9UKW4 847 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 FRMPD4Q14CM0 1322 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 KLRG2A4D1S0 409 aaPredicted RBP10.84□□□□□ -0.67
COL17A1-203ENST00000393211 PODXLO00592 558 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 FMO5P49326 533 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 MAGOHP61326 146 aaKnown RBP10.84□□□□□ -0.67
COL17A1-203ENST00000393211 GTF2IP78347 998 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 KIF22Q14807 665 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 FAM98CQ17RN3 349 aaKnown RBP10.84□□□□□ -0.67
COL17A1-203ENST00000393211 ERMARDQ5T6L9 678 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 SLFN13Q68D06 897 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 C11orf63Q6NUN7 778 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 BTNL9Q6UXG8 535 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 SLC9A9Q8IVB4 645 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 OR2W6PQ8NHA6 318 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 ATP8B4Q8TF62 1192 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 TMEM174Q8WUU8 243 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 MAGOHBQ96A72 148 aaKnown RBP10.84□□□□□ -0.67
COL17A1-203ENST00000393211 CHMP6Q96FZ7 201 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 CCDC114Q96M63 670 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 MRIQ9BWK5 157 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 ZDHHC18Q9NUE0 388 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 DMAC2Q9NW81 257 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 BCCIPQ9P287 314 aaKnown RBP eCLIP10.84□□□□□ -0.67
COL17A1-203ENST00000393211 DNAJC12Q9UKB3 198 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 SYNPO2Q9UMS6 1093 aa10.84□□□□□ -0.67
COL17A1-203ENST00000393211 SYNGAP1Q96PV0 1343 aa10.83□□□□□ -0.68
COL17A1-203ENST00000393211 C6orf229H3BNL8 230 aa10.83□□□□□ -0.68
COL17A1-203ENST00000393211 PIK3CDO00329 1044 aa10.83□□□□□ -0.68
COL17A1-203ENST00000393211 MPHOSPH10O00566 681 aaKnown RBP10.83□□□□□ -0.68
COL17A1-203ENST00000393211 MSH4O15457 936 aa10.83□□□□□ -0.68
COL17A1-203ENST00000393211 ASAP2O43150 1006 aa10.83□□□□□ -0.68
COL17A1-203ENST00000393211 NPM3O75607 178 aaKnown RBP10.83□□□□□ -0.68
COL17A1-203ENST00000393211 DNAJC8O75937 253 aaPredicted RBP10.83□□□□□ -0.68
COL17A1-203ENST00000393211 FAM13AO94988 1023 aa10.83□□□□□ -0.68
COL17A1-203ENST00000393211 TNFAIP3P21580 790 aa10.83□□□□□ -0.68
COL17A1-203ENST00000393211 DRD4P21917 467 aa10.83□□□□□ -0.68
COL17A1-203ENST00000393211 CHRNA3P32297 505 aa10.83□□□□□ -0.68
COL17A1-203ENST00000393211 RDXP35241 583 aaKnown RBP10.83□□□□□ -0.68
COL17A1-203ENST00000393211 FLT3P36888 993 aa10.83□□□□□ -0.68
COL17A1-203ENST00000393211 CASP4P49662 377 aa10.83□□□□□ -0.68
COL17A1-203ENST00000393211 DRAP1Q14919 205 aaPredicted RBP10.83□□□□□ -0.68
COL17A1-203ENST00000393211 NBPF9Q3BBW0 867 aa10.83□□□□□ -0.68
COL17A1-203ENST00000393211 ANKRD20A8PQ5CZ79 823 aa10.83□□□□□ -0.68
COL17A1-203ENST00000393211 KIAA1755Q5JYT7 1200 aa10.83□□□□□ -0.68
COL17A1-203ENST00000393211 C6orf118Q5T5N4 469 aa10.83□□□□□ -0.68
COL17A1-203ENST00000393211 RINT1Q6NUQ1 792 aa10.83□□□□□ -0.68
COL17A1-203ENST00000393211 HS2ST1Q7LGA3 356 aa10.83□□□□□ -0.68
COL17A1-203ENST00000393211 CPLX4Q7Z7G2 160 aa10.83□□□□□ -0.68
COL17A1-203ENST00000393211 FBXO11Q86XK2 927 aa10.83□□□□□ -0.68
COL17A1-203ENST00000393211 COL23A1Q86Y22 540 aaPredicted RBP10.83□□□□□ -0.68
COL17A1-203ENST00000393211 CLEC10AQ8IUN9 316 aa10.83□□□□□ -0.68
COL17A1-203ENST00000393211 UBL4BQ8N7F7 174 aa10.83□□□□□ -0.68
COL17A1-203ENST00000393211 GMCL1P1Q8NEA9 526 aa10.83□□□□□ -0.68
COL17A1-203ENST00000393211 NEK9Q8TD19 979 aa10.83□□□□□ -0.68
COL17A1-203ENST00000393211 GMCL1Q96IK5 515 aa10.83□□□□□ -0.68
COL17A1-203ENST00000393211 XPO6Q96QU8 1125 aaKnown RBP10.83□□□□□ -0.68
COL17A1-203ENST00000393211 RPS6KC1Q96S38 1066 aa10.83□□□□□ -0.68
COL17A1-203ENST00000393211 EIF2AK1Q9BQI3 630 aaKnown RBP10.83□□□□□ -0.68
COL17A1-203ENST00000393211 BHMT2Q9H2M3 363 aa10.83□□□□□ -0.68
COL17A1-203ENST00000393211 GOLPH3Q9H4A6 298 aa10.83□□□□□ -0.68
COL17A1-203ENST00000393211 CCDC134Q9H6E4 229 aa10.83□□□□□ -0.68
COL17A1-203ENST00000393211 SLC40A1Q9NP59 571 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms