RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 NOA1Q8NC60 698 aaKnown RBP23.58■■□□□ 1.36
TRIM54-202ENST00000380075 PROCA1Q8NCQ7 364 aaPredicted RBP23.58■■□□□ 1.36
TRIM54-202ENST00000380075 GOLGA5Q8TBA6 731 aa23.58■■□□□ 1.36
TRIM54-202ENST00000380075 CLEC4DQ8WXI8 215 aa23.58■■□□□ 1.36
TRIM54-202ENST00000380075 C12orf42Q96LP6 360 aa23.58■■□□□ 1.36
TRIM54-202ENST00000380075 NOX5Q96PH1 765 aa23.58■■□□□ 1.36
TRIM54-202ENST00000380075 CAPN6Q9Y6Q1 641 aa23.58■■□□□ 1.36
TRIM54-202ENST00000380075 TGFB1I1O43294 461 aa23.57■■□□□ 1.36
TRIM54-202ENST00000380075 RHOXF2BP0C7M4 288 aa23.57■■□□□ 1.36
TRIM54-202ENST00000380075 PSMC2P35998 433 aaKnown RBP23.57■■□□□ 1.36
TRIM54-202ENST00000380075 KLHL30Q0D2K2 578 aa23.57■■□□□ 1.36
TRIM54-202ENST00000380075 BEND6Q5SZJ8 279 aaPredicted RBP23.57■■□□□ 1.36
TRIM54-202ENST00000380075 C10orf76Q5T2E6 689 aa23.57■■□□□ 1.36
TRIM54-202ENST00000380075 PCNX4Q63HM2 1172 aa23.57■■□□□ 1.36
TRIM54-202ENST00000380075 SAMD1Q6SPF0 538 aaPredicted RBP23.57■■□□□ 1.36
TRIM54-202ENST00000380075 ZNF572Q7Z3I7 529 aaPredicted RBP23.57■■□□□ 1.36
TRIM54-202ENST00000380075 RHOXF2Q9BQY4 288 aa23.57■■□□□ 1.36
TRIM54-202ENST00000380075 LXNQ9BS40 222 aa23.57■■□□□ 1.36
TRIM54-202ENST00000380075 UBXN6Q9BZV1 441 aa23.57■■□□□ 1.36
TRIM54-202ENST00000380075 PCDHB13Q9Y5F0 798 aa23.57■■□□□ 1.36
TRIM54-202ENST00000380075 ARHGEF35A5YM69 484 aa23.56■■□□□ 1.36
TRIM54-202ENST00000380075 MAP2K7O14733 419 aa23.56■■□□□ 1.36
TRIM54-202ENST00000380075 VCAM1P19320 739 aa23.56■■□□□ 1.36
TRIM54-202ENST00000380075 KLHDC7AQ5VTJ3 777 aa23.56■■□□□ 1.36
TRIM54-202ENST00000380075 GBP6Q6ZN66 633 aa23.56■■□□□ 1.36
TRIM54-202ENST00000380075 HS2ST1Q7LGA3 356 aa23.56■■□□□ 1.36
TRIM54-202ENST00000380075 ZNF720Q7Z2F6 126 aa23.56■■□□□ 1.36
TRIM54-202ENST00000380075 IFNL1Q8IU54 200 aa23.56■■□□□ 1.36
TRIM54-202ENST00000380075 FAM178BQ8IXR5 827 aa23.56■■□□□ 1.36
TRIM54-202ENST00000380075 CAGE1Q8TC20 777 aa23.56■■□□□ 1.36
TRIM54-202ENST00000380075 MMS19Q96T76 1030 aa23.56■■□□□ 1.36
TRIM54-202ENST00000380075 MLXIPQ9HAP2 919 aa23.56■■□□□ 1.36
TRIM54-202ENST00000380075 SLC38A10Q9HBR0 1119 aa23.56■■□□□ 1.36
TRIM54-202ENST00000380075 PRDM10Q9NQV6 1147 aa23.56■■□□□ 1.36
TRIM54-202ENST00000380075 ZMYM2Q9UBW7 1377 aa23.56■■□□□ 1.36
TRIM54-202ENST00000380075 SASH3O75995 380 aa23.56■■□□□ 1.36
TRIM54-202ENST00000380075 MOCS3O95396 460 aa23.56■■□□□ 1.36
TRIM54-202ENST00000380075 P4HBP07237 508 aaKnown RBP23.56■■□□□ 1.36
TRIM54-202ENST00000380075 UCHL3P15374 230 aa23.56■■□□□ 1.36
TRIM54-202ENST00000380075 ITGB5P18084 799 aa23.56■■□□□ 1.36
TRIM54-202ENST00000380075 DPY19L2P1Q6NXN4 242 aa23.56■■□□□ 1.36
TRIM54-202ENST00000380075 HDXQ7Z353 690 aa23.56■■□□□ 1.36
TRIM54-202ENST00000380075 SLC35C1Q96A29 364 aa23.56■■□□□ 1.36
TRIM54-202ENST00000380075 FIZ1Q96SL8 496 aa23.56■■□□□ 1.36
TRIM54-202ENST00000380075 AGTPBP1Q9UPW5 1226 aa23.56■■□□□ 1.36
TRIM54-202ENST00000380075 HYOU1Q9Y4L1 999 aa23.56■■□□□ 1.36
TRIM54-202ENST00000380075 UBIAD1Q9Y5Z9 338 aa23.56■■□□□ 1.36
TRIM54-202ENST00000380075 ATP8B3O60423 1300 aa23.56■■□□□ 1.36
TRIM54-202ENST00000380075 SRGAP2O75044 1071 aa23.55■■□□□ 1.36
TRIM54-202ENST00000380075 PON1P27169 355 aa23.55■■□□□ 1.36
TRIM54-202ENST00000380075 MYBPC2Q14324 1141 aa23.55■■□□□ 1.36
TRIM54-202ENST00000380075 MIER3Q7Z3K6 550 aa23.55■■□□□ 1.36
TRIM54-202ENST00000380075 BORCS6Q96GS4 357 aa23.55■■□□□ 1.36
TRIM54-202ENST00000380075 KCNH7Q9NS40 1196 aa23.55■■□□□ 1.36
TRIM54-202ENST00000380075 DAAM1Q9Y4D1 1078 aa23.55■■□□□ 1.36
TRIM54-202ENST00000380075 NFIBO00712 420 aa23.54■■□□□ 1.36
TRIM54-202ENST00000380075 MAPTP10636 758 aaKnown RBP23.54■■□□□ 1.36
TRIM54-202ENST00000380075 NMT1P30419 496 aaKnown RBP23.54■■□□□ 1.36
TRIM54-202ENST00000380075 ALCAMQ13740 583 aa23.54■■□□□ 1.36
TRIM54-202ENST00000380075 DCAF17Q5H9S7 520 aaPredicted RBP23.54■■□□□ 1.36
TRIM54-202ENST00000380075 SPAG5Q96R06 1193 aa23.54■■□□□ 1.36
TRIM54-202ENST00000380075 WRAP73Q9P2S5 460 aaPredicted RBP23.54■■□□□ 1.36
TRIM54-202ENST00000380075 PTPRFP10586 1907 aa23.54■■□□□ 1.36
TRIM54-202ENST00000380075 SFI1A8K8P3 1242 aa23.54■■□□□ 1.36
TRIM54-202ENST00000380075 BTNL10A8MVZ5 291 aa23.54■■□□□ 1.36
TRIM54-202ENST00000380075 PDHXO00330 501 aa23.54■■□□□ 1.36
TRIM54-202ENST00000380075 VSNL1P62760 191 aa23.54■■□□□ 1.36
TRIM54-202ENST00000380075 ANKRD23Q86SG2 305 aa23.54■■□□□ 1.36
TRIM54-202ENST00000380075 REM2Q8IYK8 340 aaPredicted RBP23.54■■□□□ 1.36
TRIM54-202ENST00000380075 FAM186BQ8IYM0 893 aa23.54■■□□□ 1.36
TRIM54-202ENST00000380075 FAM133AQ8N9E0 248 aa23.54■■□□□ 1.36
TRIM54-202ENST00000380075 RUBCNQ92622 972 aa23.54■■□□□ 1.36
TRIM54-202ENST00000380075 RPAP3Q9H6T3 665 aaPredicted RBP23.54■■□□□ 1.36
TRIM54-202ENST00000380075 COL20A1Q9P218 1284 aa23.54■■□□□ 1.36
TRIM54-202ENST00000380075 DBR1Q9UK59 544 aaKnown RBP23.54■■□□□ 1.36
TRIM54-202ENST00000380075 PPP1R9AQ9ULJ8 1098 aa23.54■■□□□ 1.36
TRIM54-202ENST00000380075 PRKCIP41743 596 aa23.53■■□□□ 1.36
TRIM54-202ENST00000380075 TKFCQ3LXA3 575 aa23.53■■□□□ 1.36
TRIM54-202ENST00000380075 ODR4Q5SWX8 454 aa23.53■■□□□ 1.36
TRIM54-202ENST00000380075 TCERG1LQ5VWI1 586 aa23.53■■□□□ 1.36
TRIM54-202ENST00000380075 CCDC70Q6NSX1 233 aa23.53■■□□□ 1.36
TRIM54-202ENST00000380075 SLC30A10Q6XR72 485 aa23.53■■□□□ 1.36
TRIM54-202ENST00000380075 CAPZA3Q96KX2 299 aa23.53■■□□□ 1.36
TRIM54-202ENST00000380075 TBC1D22BQ9NU19 505 aa23.53■■□□□ 1.36
TRIM54-202ENST00000380075 DMAC2Q9NW81 257 aa23.53■■□□□ 1.36
TRIM54-202ENST00000380075 L1RE1Q9UN81 338 aa23.53■■□□□ 1.36
TRIM54-202ENST00000380075 CLIC2O15247 247 aa23.52■■□□□ 1.36
TRIM54-202ENST00000380075 LYPLA2O95372 231 aa23.52■■□□□ 1.36
TRIM54-202ENST00000380075 SLC9A1P19634 815 aa23.52■■□□□ 1.36
TRIM54-202ENST00000380075 CASP4P49662 377 aa23.52■■□□□ 1.36
TRIM54-202ENST00000380075 KCNA1Q09470 495 aa23.52■■□□□ 1.36
TRIM54-202ENST00000380075 GPS2Q13227 327 aa23.52■■□□□ 1.36
TRIM54-202ENST00000380075 PPP2R5AQ15172 486 aa23.52■■□□□ 1.36
TRIM54-202ENST00000380075 NAB2Q15742 525 aa23.52■■□□□ 1.36
TRIM54-202ENST00000380075 MAP9Q49MG5 647 aa23.52■■□□□ 1.36
TRIM54-202ENST00000380075 SLC9A9Q8IVB4 645 aa23.52■■□□□ 1.36
TRIM54-202ENST00000380075 SYTL5Q8TDW5 730 aaPredicted RBP23.52■■□□□ 1.36
TRIM54-202ENST00000380075 AGO4Q9HCK5 861 aaKnown RBP23.52■■□□□ 1.36
TRIM54-202ENST00000380075 RNF14Q9UBS8 474 aa23.52■■□□□ 1.36
TRIM54-202ENST00000380075 ZBTB39O15060 712 aa23.52■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms