RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 ALDH1A2O94788 518 aa11.33□□□□□ -0.6
RTN3-206ENST00000377819 NR2F2P24468 414 aa11.33□□□□□ -0.6
RTN3-206ENST00000377819 USP14P54578 494 aa11.33□□□□□ -0.6
RTN3-206ENST00000377819 CNGA2Q16280 664 aa11.33□□□□□ -0.6
RTN3-206ENST00000377819 C1orf146Q5VVC0 180 aa11.33□□□□□ -0.6
RTN3-206ENST00000377819 ARMC6Q6NXE6 501 aa11.33□□□□□ -0.6
RTN3-206ENST00000377819 MIS18BP1Q6P0N0 1132 aa11.33□□□□□ -0.6
RTN3-206ENST00000377819 KLHL24Q6TFL4 600 aa11.33□□□□□ -0.6
RTN3-206ENST00000377819 TTC13Q8NBP0 860 aa11.33□□□□□ -0.6
RTN3-206ENST00000377819 STAMBPL1Q96FJ0 436 aa11.33□□□□□ -0.6
RTN3-206ENST00000377819 SESN1Q9Y6P5 492 aa11.33□□□□□ -0.6
RTN3-206ENST00000377819 FPGT-TNNI3KV9GXZ4 949 aa11.33□□□□□ -0.6
RTN3-206ENST00000377819 POTEFA5A3E0 1075 aa11.33□□□□□ -0.6
RTN3-206ENST00000377819 GNAT1P11488 350 aa11.33□□□□□ -0.6
RTN3-206ENST00000377819 ST8SIA6P61647 398 aa11.33□□□□□ -0.6
RTN3-206ENST00000377819 SLC44A4Q53GD3 710 aa11.33□□□□□ -0.6
RTN3-206ENST00000377819 IRAK1BP1Q5VVH5 260 aa11.33□□□□□ -0.6
RTN3-206ENST00000377819 TRAF7Q6Q0C0 670 aa11.33□□□□□ -0.6
RTN3-206ENST00000377819 RPF1Q9H9Y2 349 aaKnown RBP11.33□□□□□ -0.6
RTN3-206ENST00000377819 EPB41L5Q9HCM4 733 aa11.33□□□□□ -0.6
RTN3-206ENST00000377819 SLC39A2Q9NP94 309 aa11.33□□□□□ -0.6
RTN3-206ENST00000377819 ARHGAP5Q13017 1502 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 TBC1D12O60347 775 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 FYNP06241 537 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 SLCO1A2P46721 670 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 ZNF544Q6NX49 715 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 OOSP2Q86WS3 158 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 NT5DC4Q86YG4 428 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 AHI1Q8N157 1196 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 DDI1Q8WTU0 396 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 SCFD1Q8WVM8 642 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 CNKSR1Q969H4 720 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 XAGE2Q96GT9 111 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 MYL10Q9BUA6 226 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 MAGEF1Q9HAY2 307 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 RAD18Q9NS91 495 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 NFIBO00712 420 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 ADCY3O60266 1144 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 MAP4P27816 1152 aaKnown RBP11.32□□□□□ -0.6
RTN3-206ENST00000377819 MXI1P50539 228 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 ARL4CP56559 192 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 RPS8P62241 208 aaKnown RBP11.32□□□□□ -0.6
RTN3-206ENST00000377819 SHROOM1Q2M3G4 852 aaPredicted RBP11.32□□□□□ -0.6
RTN3-206ENST00000377819 FAM45BPQ6NSW5 357 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 ARHGEF25Q86VW2 580 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 ERICH1Q86X53 443 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 KIRREL3Q8IZU9 778 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 FAF2Q96CS3 445 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 HES6Q96HZ4 224 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 AGBL1Q96MI9 1066 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 ABT1Q9ULW3 272 aaKnown RBP11.32□□□□□ -0.6
RTN3-206ENST00000377819 STAP1Q9ULZ2 295 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 DIP2BQ9P265 1576 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 USP17L12C9JPN9 530 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 USP17L21D6R901 530 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 AFPP02771 609 aaKnown RBP11.32□□□□□ -0.6
RTN3-206ENST00000377819 NCALDP61601 193 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 CCDC15Q0P6D6 951 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 C6orf10Q5SRN2 563 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 BTNL9Q6UXG8 535 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 CCDC149Q6ZUS6 474 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 OLFM3Q96PB7 478 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 SPHKAPQ2M3C7 1700 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 GOLGA8TH3BQL2 631 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 GOLGA8HP0CJ92 632 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 DARSP14868 501 aaKnown RBP11.32□□□□□ -0.6
RTN3-206ENST00000377819 ITGAXP20702 1163 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 CLK1P49759 484 aaKnown RBP11.32□□□□□ -0.6
RTN3-206ENST00000377819 FKBP3Q00688 224 aaKnown RBP11.32□□□□□ -0.6
RTN3-206ENST00000377819 TOGARAM2Q6ZUX3 1019 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 MICU2Q8IYU8 434 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 RABGGTAQ92696 567 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 DESI2Q9BSY9 194 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 TMEM60Q9H2L4 133 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 EHD2Q9NZN4 543 aa11.32□□□□□ -0.6
RTN3-206ENST00000377819 ACEP12821 1306 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 hCG_1642624A0A1W2PR95 340 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 CHRNA3P32297 505 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 KIF23Q02241 960 aaPredicted RBP11.31□□□□□ -0.6
RTN3-206ENST00000377819 ZNF667Q5HYK9 610 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 C10orf76Q5T2E6 689 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 KBTBD3Q8NAB2 608 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 PNMA1Q8ND90 353 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 DTX3LQ8TDB6 740 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 DCTPP1Q9H773 170 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 NHEJ1Q9H9Q4 299 aaPredicted RBP11.31□□□□□ -0.6
RTN3-206ENST00000377819 COPRSQ9NQ92 184 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 UBA6A0AVT1 1052 aaPredicted RBP11.31□□□□□ -0.6
RTN3-206ENST00000377819 CYBBP04839 570 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 SERPINB4P48594 390 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 LLGL1Q15334 1064 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 TAS2R42Q7RTR8 314 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 TLK2Q86UE8 772 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 TRIM63Q969Q1 353 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 SMYD3Q9H7B4 428 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 CDC23Q9UJX2 597 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 FBXL5Q9UKA1 691 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 LRRC53A6NM62 1247 aa11.31□□□□□ -0.6
RTN3-206ENST00000377819 MAPRE1Q15691 268 aaKnown RBP11.31□□□□□ -0.6
RTN3-206ENST00000377819 GPATCH4Q5T3I0 446 aaKnown RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms