RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 CDCA2Q69YH5 1023 aaPredicted RBP3.32□□□□□ -1.88
VPS13A-206ENST00000376646 SLFN12LQ6IEE8 588 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 MAMDC4Q6UXC1 1216 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 UNQ6494/PRO21346Q6UXR6 183 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 C1orf210Q8IVY1 113 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 OR5AN1Q8NGI8 311 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 ELF4Q99607 663 aaPredicted RBP3.32□□□□□ -1.88
VPS13A-206ENST00000376646 FOXB1Q99853 325 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 CSRNP2Q9H175 543 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 SEMA4AQ9H3S1 761 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 DNAI1Q9UI46 699 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 CTDP1Q9Y5B0 961 aaPredicted RBP3.32□□□□□ -1.88
VPS13A-206ENST00000376646 UBA6A0AVT1 1052 aaPredicted RBP3.31□□□□□ -1.88
VPS13A-206ENST00000376646 LCHNA4D1U4 455 aa3.31□□□□□ -1.88
VPS13A-206ENST00000376646 KPNA6O60684 536 aa3.31□□□□□ -1.88
VPS13A-206ENST00000376646 APOL3O95236 402 aa3.31□□□□□ -1.88
VPS13A-206ENST00000376646 NPTXRO95502 500 aa3.31□□□□□ -1.88
VPS13A-206ENST00000376646 HIBADHP31937 336 aaKnown RBP3.31□□□□□ -1.88
VPS13A-206ENST00000376646 SGMS1Q86VZ5 419 aa3.31□□□□□ -1.88
VPS13A-206ENST00000376646 NXPE1Q8N323 547 aa3.31□□□□□ -1.88
VPS13A-206ENST00000376646 RTF1Q92541 710 aaKnown RBP3.31□□□□□ -1.88
VPS13A-206ENST00000376646 ZNF503Q96F45 646 aa3.31□□□□□ -1.88
VPS13A-206ENST00000376646 C16orf92Q96LL3 132 aa3.31□□□□□ -1.88
VPS13A-206ENST00000376646 TUBGCP5Q96RT8 1024 aa3.31□□□□□ -1.88
VPS13A-206ENST00000376646 POFUT1Q9H488 388 aa3.31□□□□□ -1.88
VPS13A-206ENST00000376646 DENND2AQ9ULE3 1009 aa3.31□□□□□ -1.88
VPS13A-206ENST00000376646 SH3BP1Q9Y3L3 701 aa3.31□□□□□ -1.88
VPS13A-206ENST00000376646 A0A1W2PRX2 142 aa3.31□□□□□ -1.88
VPS13A-206ENST00000376646 FAM83GA6ND36 823 aa3.31□□□□□ -1.88
VPS13A-206ENST00000376646 ZNF891A8MT65 544 aaPredicted RBP3.31□□□□□ -1.88
VPS13A-206ENST00000376646 H7C1D1 291 aa3.31□□□□□ -1.88
VPS13A-206ENST00000376646 CBX4O00257 560 aa3.31□□□□□ -1.88
VPS13A-206ENST00000376646 HNRNPLP14866 589 aaKnown RBP eCLIP3.31□□□□□ -1.88
VPS13A-206ENST00000376646 RPS19P39019 145 aaKnown RBP3.31□□□□□ -1.88
VPS13A-206ENST00000376646 ROM1Q03395 351 aa3.31□□□□□ -1.88
VPS13A-206ENST00000376646 CFAP100Q494V2 611 aa3.31□□□□□ -1.88
VPS13A-206ENST00000376646 D2HGDHQ8N465 521 aa3.31□□□□□ -1.88
VPS13A-206ENST00000376646 ANKRD53Q8N9V6 530 aa3.31□□□□□ -1.88
VPS13A-206ENST00000376646 MAML3Q96JK9 1138 aa3.31□□□□□ -1.88
VPS13A-206ENST00000376646 RNPC3Q96LT9 517 aaKnown RBP3.31□□□□□ -1.88
VPS13A-206ENST00000376646 PLEKHG4BQ96PX9 1271 aa3.31□□□□□ -1.88
VPS13A-206ENST00000376646 GPHA2Q96T91 129 aa3.31□□□□□ -1.88
VPS13A-206ENST00000376646 MRIQ9BWK5 157 aa3.31□□□□□ -1.88
VPS13A-206ENST00000376646 MS4A5Q9H3V2 200 aa3.31□□□□□ -1.88
VPS13A-206ENST00000376646 CABP5Q9NP86 173 aa3.31□□□□□ -1.88
VPS13A-206ENST00000376646 TMEM260Q9NX78 707 aa3.31□□□□□ -1.88
VPS13A-206ENST00000376646 SAE1Q9UBE0 346 aaPredicted RBP3.31□□□□□ -1.88
VPS13A-206ENST00000376646 ATP2A2P16615 1042 aaKnown RBP3.3□□□□□ -1.88
VPS13A-206ENST00000376646 FNTBP49356 437 aa3.3□□□□□ -1.88
VPS13A-206ENST00000376646 ADCY7P51828 1080 aa3.3□□□□□ -1.88
VPS13A-206ENST00000376646 HMGA2P52926 109 aa3.3□□□□□ -1.88
VPS13A-206ENST00000376646 BPIFB4P59827 614 aa3.3□□□□□ -1.88
VPS13A-206ENST00000376646 MAP3K12Q12852 859 aa3.3□□□□□ -1.88
VPS13A-206ENST00000376646 ARHGAP44Q17R89 818 aa3.3□□□□□ -1.88
VPS13A-206ENST00000376646 MIIPQ5JXC2 388 aa3.3□□□□□ -1.88
VPS13A-206ENST00000376646 PCED1AQ9H1Q7 454 aa3.3□□□□□ -1.88
VPS13A-206ENST00000376646 TOMM22Q9NS69 142 aa3.3□□□□□ -1.88
VPS13A-206ENST00000376646 OXSMQ9NWU1 459 aa3.3□□□□□ -1.88
VPS13A-206ENST00000376646 B4GALT6Q9UBX8 382 aa3.3□□□□□ -1.88
VPS13A-206ENST00000376646 CAPN14A8MX76 684 aa3.3□□□□□ -1.88
VPS13A-206ENST00000376646 B4E1Z4 1266 aa3.3□□□□□ -1.88
VPS13A-206ENST00000376646 ADAM8P78325 824 aa3.3□□□□□ -1.88
VPS13A-206ENST00000376646 PTH1RQ03431 593 aa3.3□□□□□ -1.88
VPS13A-206ENST00000376646 TCIRG1Q13488 830 aa3.3□□□□□ -1.88
VPS13A-206ENST00000376646 ZNF174Q15697 407 aa3.3□□□□□ -1.88
VPS13A-206ENST00000376646 TTC38Q5R3I4 469 aa3.3□□□□□ -1.88
VPS13A-206ENST00000376646 KLHDC10Q6PID8 442 aa3.3□□□□□ -1.88
VPS13A-206ENST00000376646 GAREM2Q75VX8 874 aa3.3□□□□□ -1.88
VPS13A-206ENST00000376646 GCDHQ92947 438 aaPredicted RBP3.3□□□□□ -1.88
VPS13A-206ENST00000376646 NKD2Q969F2 451 aaPredicted RBP3.3□□□□□ -1.88
VPS13A-206ENST00000376646 FAM89AQ96GI7 184 aa3.3□□□□□ -1.88
VPS13A-206ENST00000376646 MYL10Q9BUA6 226 aa3.3□□□□□ -1.88
VPS13A-206ENST00000376646 ACSS2Q9NR19 701 aa3.3□□□□□ -1.88
VPS13A-206ENST00000376646 NARSO43776 548 aaKnown RBP3.29□□□□□ -1.88
VPS13A-206ENST00000376646 ZNF202O95125 648 aa3.29□□□□□ -1.88
VPS13A-206ENST00000376646 ACRV1P26436 265 aa3.29□□□□□ -1.88
VPS13A-206ENST00000376646 NEK4P51957 841 aa3.29□□□□□ -1.88
VPS13A-206ENST00000376646 DGKDQ16760 1214 aa3.29□□□□□ -1.88
VPS13A-206ENST00000376646 LSM12Q3MHD2 195 aaKnown RBP3.29□□□□□ -1.88
VPS13A-206ENST00000376646 CNNM4Q6P4Q7 775 aa3.29□□□□□ -1.88
VPS13A-206ENST00000376646 Q6ZRM9 215 aa3.29□□□□□ -1.88
VPS13A-206ENST00000376646 ADGRE4PQ86SQ3 457 aa3.29□□□□□ -1.88
VPS13A-206ENST00000376646 DYDC2Q96IM9 177 aa3.29□□□□□ -1.88
VPS13A-206ENST00000376646 MTFR1LQ9H019 292 aa3.29□□□□□ -1.88
VPS13A-206ENST00000376646 MTG2Q9H4K7 406 aa3.29□□□□□ -1.88
VPS13A-206ENST00000376646 UBE2QL1A1L167 161 aa3.28□□□□□ -1.88
VPS13A-206ENST00000376646 GOLGA8BA8MQT2 603 aa3.28□□□□□ -1.88
VPS13A-206ENST00000376646 TOX4O94842 621 aa3.28□□□□□ -1.88
VPS13A-206ENST00000376646 PCBP1Q15365 356 aaKnown RBP eCLIP3.28□□□□□ -1.88
VPS13A-206ENST00000376646 FNDC7Q5VTL7 733 aa3.28□□□□□ -1.88
VPS13A-206ENST00000376646 UBE2R2Q712K3 238 aaPredicted RBP3.28□□□□□ -1.88
VPS13A-206ENST00000376646 DHX37Q8IY37 1157 aaKnown RBP3.28□□□□□ -1.88
VPS13A-206ENST00000376646 CHTF18Q8WVB6 975 aa3.28□□□□□ -1.88
VPS13A-206ENST00000376646 PGBD4Q96DM1 585 aa3.28□□□□□ -1.88
VPS13A-206ENST00000376646 DRC1Q96MC2 740 aa3.28□□□□□ -1.88
VPS13A-206ENST00000376646 ZMAT4Q9H898 229 aa3.28□□□□□ -1.88
VPS13A-206ENST00000376646 FANCLQ9NW38 375 aa3.28□□□□□ -1.88
VPS13A-206ENST00000376646 THG1LQ9NWX6 298 aaKnown RBP3.28□□□□□ -1.88
VPS13A-206ENST00000376646 NCDNQ9UBB6 729 aa3.28□□□□□ -1.88
VPS13A-206ENST00000376646 CYR61O00622 381 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms