RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 SEC31AO94979 1220 aaKnown RBP13.3□□□□□ -0.28
VPS13A-204ENST00000376634 WDR75Q8IWA0 830 aaKnown RBP13.3□□□□□ -0.28
VPS13A-204ENST00000376634 RBM41Q96IZ5 413 aaKnown RBP13.3□□□□□ -0.28
VPS13A-204ENST00000376634 PITPNM3Q9BZ71 974 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 DENND3A2RUS2 1198 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 CHGBP05060 677 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 ZNF467Q7Z7K2 595 aaPredicted RBP13.29□□□□□ -0.28
VPS13A-204ENST00000376634 EXOC4Q96A65 974 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 ZBED2Q9BTP6 218 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 ATP10BO94823 1461 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 GSNP06396 782 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 IL13P35225 146 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 TRPC1P48995 793 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 DNAJC10Q8IXB1 793 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 B4GALNT2Q8NHY0 566 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 EML4Q9HC35 981 aaKnown RBP13.29□□□□□ -0.28
VPS13A-204ENST00000376634 SAYSD1Q9NPB0 183 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 MAP3K15Q6ZN16 1313 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 MEIS1O00470 390 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 RWDD2BP57060 319 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 ERICH1Q86X53 443 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 GPT2Q8TD30 523 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 GCOM2Q9BZD3 368 aaPredicted RBP13.29□□□□□ -0.28
VPS13A-204ENST00000376634 ZMYM3Q14202 1370 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 RP1L1Q8IWN7 2480 aaPredicted RBP13.29□□□□□ -0.28
VPS13A-204ENST00000376634 KITP10721 976 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 DEPDC1Q5TB30 811 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 RHOT2Q8IXI1 618 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 TBCKQ8TEA7 893 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 TTC17Q96AE7 1141 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 ATP6V0A4Q9HBG4 840 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 SARS2Q9NP81 518 aaKnown RBP13.29□□□□□ -0.28
VPS13A-204ENST00000376634 PTH1RQ03431 593 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 EMBQ6PCB8 327 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 DNAJC17Q9NVM6 304 aaKnown RBP13.29□□□□□ -0.28
VPS13A-204ENST00000376634 CLCA2Q9UQC9 943 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 MED21Q13503 144 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 PLAAQ9Y263 795 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 DIS3Q9Y2L1 958 aaKnown RBP13.29□□□□□ -0.28
VPS13A-204ENST00000376634 ARHGAP10A1A4S6 786 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 GNAT1P11488 350 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 RGS9BPQ6ZS82 235 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 CCDC88CQ9P219 2028 aa13.29□□□□□ -0.28
VPS13A-204ENST00000376634 NUP153P49790 1475 aaKnown RBP13.29□□□□□ -0.28
VPS13A-204ENST00000376634 PI4K2BG5E9Z4 385 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 PDIA3P30101 505 aaKnown RBP13.28□□□□□ -0.28
VPS13A-204ENST00000376634 SH3KBP1Q96B97 665 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 NGRNQ9NPE2 291 aaKnown RBP13.28□□□□□ -0.28
VPS13A-204ENST00000376634 IKBKBO14920 756 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 JAK3P52333 1124 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 GJC2Q5T442 439 aaPredicted RBP13.28□□□□□ -0.28
VPS13A-204ENST00000376634 DSTYKQ6XUX3 929 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 DDX42Q86XP3 938 aaKnown RBP eCLIP13.28□□□□□ -0.28
VPS13A-204ENST00000376634 CCDC90BQ9GZT6 254 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 ATG3Q9NT62 314 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 MTMR6Q9Y217 621 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 TTC37Q6PGP7 1564 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 K7ERI5 159 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 MTERF2Q49AM1 385 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 DDX28Q9NUL7 540 aaKnown RBP13.28□□□□□ -0.28
VPS13A-204ENST00000376634 PJA2O43164 708 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 PLA2G4BP0C869 781 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 NNMTP40261 264 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 SLC39A14Q15043 492 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 TOGARAM2Q6ZUX3 1019 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 TADA2BQ86TJ2 420 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 DDX17Q92841 729 aaKnown RBP13.28□□□□□ -0.28
VPS13A-204ENST00000376634 ZNF496Q96IT1 587 aaPredicted RBP13.28□□□□□ -0.28
VPS13A-204ENST00000376634 NFU1Q9UMS0 254 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 SP110Q9HB58 689 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 PCDHA5Q9Y5H7 936 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 E2F4Q16254 413 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 ZBTB12Q9Y330 459 aaPredicted RBP13.28□□□□□ -0.28
VPS13A-204ENST00000376634 SYNDIG1LA6NDD5 238 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 ANKS3Q6ZW76 656 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 PPHLN1Q8NEY8 458 aaKnown RBP13.28□□□□□ -0.28
VPS13A-204ENST00000376634 NFKBIL1Q9UBC1 381 aaPredicted RBP13.28□□□□□ -0.28
VPS13A-204ENST00000376634 SERPINB13Q9UIV8 391 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 HEY1Q9Y5J3 304 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 RASSF10A6NK89 507 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 DMC1Q14565 340 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 STXBP2Q15833 593 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 NUGGCQ68CJ6 796 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 TMC4Q7Z404 712 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 EGFL8Q99944 293 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 POLE3Q9NRF9 147 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 ANAPC7Q9UJX3 599 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 PALD1Q9ULE6 856 aa13.28□□□□□ -0.28
VPS13A-204ENST00000376634 CIAO1O76071 339 aa13.27□□□□□ -0.28
VPS13A-204ENST00000376634 DPCR1Q3MIW9 517 aa13.27□□□□□ -0.28
VPS13A-204ENST00000376634 MAN1B1Q9UKM7 699 aa13.27□□□□□ -0.28
VPS13A-204ENST00000376634 ZFYVE16Q7Z3T8 1539 aa13.27□□□□□ -0.28
VPS13A-204ENST00000376634 MFN1Q8IWA4 741 aa13.27□□□□□ -0.28
VPS13A-204ENST00000376634 SAAL1Q96ER3 474 aa13.27□□□□□ -0.28
VPS13A-204ENST00000376634 SLC9A5Q14940 896 aa13.27□□□□□ -0.28
VPS13A-204ENST00000376634 TRIM8Q9BZR9 551 aa13.27□□□□□ -0.28
VPS13A-204ENST00000376634 RNF103-CHMP3A0A140T963 221 aa13.27□□□□□ -0.28
VPS13A-204ENST00000376634 DTNBO60941 627 aa13.27□□□□□ -0.28
VPS13A-204ENST00000376634 NDUFA10O95299 355 aa13.27□□□□□ -0.28
VPS13A-204ENST00000376634 HNRNPCP07910 306 aaKnown RBP eCLIP13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms