RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 DNAJC1Q96KC8 554 aaKnown RBP12.62□□□□□ -0.39
PTPN1-201ENST00000371621 HEMGNQ9BXL5 484 aa12.62□□□□□ -0.39
PTPN1-201ENST00000371621 F8VZ95 297 aa12.62□□□□□ -0.39
PTPN1-201ENST00000371621 CCDC22O60826 627 aa12.62□□□□□ -0.39
PTPN1-201ENST00000371621 KRT5P13647 590 aa12.62□□□□□ -0.39
PTPN1-201ENST00000371621 ATP6V1C1P21283 382 aa12.62□□□□□ -0.39
PTPN1-201ENST00000371621 FLT3P36888 993 aa12.62□□□□□ -0.39
PTPN1-201ENST00000371621 PMS1P54277 932 aaKnown RBP12.62□□□□□ -0.39
PTPN1-201ENST00000371621 C16orf72Q14CZ0 275 aa12.62□□□□□ -0.39
PTPN1-201ENST00000371621 FAM228AQ86W67 206 aa12.62□□□□□ -0.39
PTPN1-201ENST00000371621 ZNF507Q8TCN5 953 aa12.62□□□□□ -0.39
PTPN1-201ENST00000371621 TRIM56Q9BRZ2 755 aaKnown RBP12.62□□□□□ -0.39
PTPN1-201ENST00000371621 PABPC3Q9H361 631 aaKnown RBP12.62□□□□□ -0.39
PTPN1-201ENST00000371621 RXFP1Q9HBX9 757 aa12.62□□□□□ -0.39
PTPN1-201ENST00000371621 MCM9Q9NXL9 1143 aa12.62□□□□□ -0.39
PTPN1-201ENST00000371621 COL4A3BPQ9Y5P4 624 aa12.62□□□□□ -0.39
PTPN1-201ENST00000371621 ADGRB3O60242 1522 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 GOLGA8SH3BPF8 625 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 GOLGA8MH3BSY2 632 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 MCF2LO15068 1137 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 APOEP02649 317 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 SCG2P13521 617 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 PAX3P23760 479 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 CAVIN4Q5BKX8 364 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 NSMFQ6X4W1 530 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 MIGA2Q7L4E1 593 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 ADSSL1Q8N142 457 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 KCNH5Q8NCM2 988 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 MAGEC3Q8TD91 643 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 C1orf54Q8WWF1 131 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 ACSBG1Q96GR2 724 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 SYT15Q9BQS2 421 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.61□□□□□ -0.392e-10■■■□□ 18.9
PTPN1-201ENST00000371621 PLAGL2Q9UPG8 496 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 RBMX2Q9Y388 322 aaKnown RBP12.61□□□□□ -0.39
PTPN1-201ENST00000371621 DEPDC5O75140 1603 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 MROH2AA6NES4 1674 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 CLIC2O15247 247 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 MYL1P05976 194 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 PLS3P13797 630 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 RPL13P26373 211 aaKnown RBP12.61□□□□□ -0.39
PTPN1-201ENST00000371621 ARL1P40616 181 aaPredicted RBP12.61□□□□□ -0.39
PTPN1-201ENST00000371621 MLH1P40692 756 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 ANTXR2P58335 489 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 ERMARDQ5T6L9 678 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 IRGCQ6NXR0 463 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 MTDHQ86UE4 582 aaKnown RBP12.61□□□□□ -0.39
PTPN1-201ENST00000371621 KIAA2013Q8IYS2 634 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 GALNT4Q8N4A0 578 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 RUBCNQ92622 972 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 MTBPQ96DY7 904 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 DMAP1Q9NPF5 467 aaPredicted RBP12.61□□□□□ -0.39
PTPN1-201ENST00000371621 LMCD1Q9NZU5 365 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 ATXN10Q9UBB4 475 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 AGAP1Q9UPQ3 857 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 TDRKHQ9Y2W6 561 aaKnown RBP12.61□□□□□ -0.39
PTPN1-201ENST00000371621 VWDEQ8N2E2 1590 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 ASAP2O43150 1006 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 GCNT3O95395 438 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 LINGO3P0C6S8 592 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 NCF2P19878 526 aaPredicted RBP12.61□□□□□ -0.39
PTPN1-201ENST00000371621 CBX3Q13185 183 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 TAF1BQ53T94 588 aaPredicted RBP12.61□□□□□ -0.39
PTPN1-201ENST00000371621 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.61□□□□□ -0.39
PTPN1-201ENST00000371621 MED23Q9ULK4 1368 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 FRMPD1Q5SYB0 1578 aa12.61□□□□□ -0.39
PTPN1-201ENST00000371621 NOP56O00567 594 aaKnown RBP12.6□□□□□ -0.39
PTPN1-201ENST00000371621 TOB1P50616 345 aaPredicted RBP12.6□□□□□ -0.39
PTPN1-201ENST00000371621 WDR59Q6PJI9 974 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 CCDC80Q76M96 950 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 CASP10Q92851 521 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 LRGUKQ96M69 825 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 MAP3K14Q99558 947 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 SLITRK6Q9H5Y7 841 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 USP40Q9NVE5 1235 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 BABAM1Q9NWV8 329 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 PHF8Q9UPP1 1060 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 CYP2D7A0A087X1C5 515 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 CYP2J2P51589 502 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 ITIH3Q06033 890 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 HLFQ16534 295 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 CALCRLQ16602 461 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 LRRC8BQ6P9F7 803 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 CLEC4GQ6UXB4 293 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 SPIRE2Q8WWL2 714 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 FAM118BQ9BPY3 351 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 TBC1D10AQ9BXI6 508 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 SLC5A4Q9NY91 659 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 NUB1Q9Y5A7 615 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 NEDD4P46934 1319 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 SOS2Q07890 1332 aaPredicted RBP12.6□□□□□ -0.39
PTPN1-201ENST00000371621 GIPC1O14908 333 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 KRT36O76013 467 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 GJA8P48165 433 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 NONOQ15233 471 aaKnown RBP eCLIP12.6□□□□□ -0.39
PTPN1-201ENST00000371621 RBM26Q5T8P6 1007 aaKnown RBP12.6□□□□□ -0.39
PTPN1-201ENST00000371621 TMEM110Q86TL2 294 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 GLYCTKQ8IVS8 523 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.6□□□□□ -0.39
PTPN1-201ENST00000371621 CATSPER2Q96P56 530 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 94.8 ms