RNA–Protein interactions for RNA: ENST00000368019.5

USF1-201, Transcript of upstream transcription factor 1, humanhuman

TSL 5 BASIC

Gene USF1, Length 998 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-201ENST00000368019 FOXR1Q6PIV2 292 aa12.64□□□□□ -0.39
USF1-201ENST00000368019 ZNF713Q8N859 430 aaPredicted RBP12.64□□□□□ -0.39
USF1-201ENST00000368019 SPATA4Q8NEY3 305 aa12.64□□□□□ -0.39
USF1-201ENST00000368019 CEP89Q96ST8 783 aa12.64□□□□□ -0.39
USF1-201ENST00000368019 CAPS2Q9BXY5 557 aa12.64□□□□□ -0.39
USF1-201ENST00000368019 HDAC6Q9UBN7 1215 aa12.64□□□□□ -0.39
USF1-201ENST00000368019 PHF24Q9UPV7 400 aa12.64□□□□□ -0.39
USF1-201ENST00000368019 SIK3Q9Y2K2 1263 aa12.64□□□□□ -0.39
USF1-201ENST00000368019 ESYT2A0FGR8 921 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 TRIM43BA6NCK2 446 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 ENC1O14682 589 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 HSF2BPO75031 334 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 PHACTR2O75167 634 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 PGK2P07205 417 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 OR52Z1P0C646 297 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 ZNF865P0CJ78 1059 aaPredicted RBP12.63□□□□□ -0.39
USF1-201ENST00000368019 TAL1P17542 331 aaPredicted RBP12.63□□□□□ -0.39
USF1-201ENST00000368019 RASA1P20936 1047 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 MTIF2P46199 727 aaKnown RBP12.63□□□□□ -0.39
USF1-201ENST00000368019 PDE4DQ08499 809 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 PSMD2Q13200 908 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 SHHQ15465 462 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 VWA3BQ502W6 1294 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 FAM83BQ5T0W9 1011 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 RCSD1Q6JBY9 416 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 CABP7Q86V35 215 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 PACS2Q86VP3 889 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 GUF1Q8N442 669 aaKnown RBP12.63□□□□□ -0.39
USF1-201ENST00000368019 C3orf20Q8ND61 904 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 TRIM43Q96BQ3 446 aaPredicted RBP12.63□□□□□ -0.39
USF1-201ENST00000368019 OSBPL9Q96SU4 736 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 MMP19Q99542 508 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 TINF2Q9BSI4 451 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 NOC4LQ9BVI4 516 aaKnown RBP12.63□□□□□ -0.39
USF1-201ENST00000368019 IFIH1Q9BYX4 1025 aaKnown RBP12.63□□□□□ -0.39
USF1-201ENST00000368019 KAT14Q9H8E8 782 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 GOPCQ9HD26 462 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 PDLIM7Q9NR12 457 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 AGPAT5Q9NUQ2 364 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 STIM2Q9P246 746 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 PRKAG2Q9UGJ0 569 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 PCDHA6Q9UN73 950 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 PCDHA8Q9Y5H6 950 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 PCDHA13Q9Y5I0 950 aa12.63□□□□□ -0.39
USF1-201ENST00000368019 GRIN2DO15399 1336 aa12.62□□□□□ -0.39
USF1-201ENST00000368019 RCCD1A6NED2 376 aa12.62□□□□□ -0.39
USF1-201ENST00000368019 COPB2P35606 906 aa12.62□□□□□ -0.39
USF1-201ENST00000368019 KIF11P52732 1056 aa12.62□□□□□ -0.39
USF1-201ENST00000368019 TLE2Q04725 743 aa12.62□□□□□ -0.39
USF1-201ENST00000368019 PAK2Q13177 524 aa12.62□□□□□ -0.39
USF1-201ENST00000368019 C9orf50Q5SZB4 431 aa12.62□□□□□ -0.39
USF1-201ENST00000368019 HAUS3Q68CZ6 603 aa12.62□□□□□ -0.39
USF1-201ENST00000368019 SAMD1Q6SPF0 538 aaPredicted RBP12.62□□□□□ -0.39
USF1-201ENST00000368019 KDM7AQ6ZMT4 941 aa12.62□□□□□ -0.39
USF1-201ENST00000368019 MICALCLQ6ZW33 695 aa12.62□□□□□ -0.39
USF1-201ENST00000368019 UNC13DQ70J99 1090 aa12.62□□□□□ -0.39
USF1-201ENST00000368019 SND1Q7KZF4 910 aaKnown RBP eCLIP12.62□□□□□ -0.39
USF1-201ENST00000368019 YTHDF3Q7Z739 585 aaKnown RBP12.62□□□□□ -0.39
USF1-201ENST00000368019 RPAINQ86UA6 219 aa12.62□□□□□ -0.39
USF1-201ENST00000368019 IFT20Q8IY31 132 aa12.62□□□□□ -0.39
USF1-201ENST00000368019 BADQ92934 168 aa12.62□□□□□ -0.39
USF1-201ENST00000368019 RUFY1Q96T51 708 aa12.62□□□□□ -0.39
USF1-201ENST00000368019 SPZ1Q9BXG8 430 aa12.62□□□□□ -0.39
USF1-201ENST00000368019 ZMYND12Q9H0C1 365 aa12.62□□□□□ -0.39
USF1-201ENST00000368019 RIC8AQ9NPQ8 531 aa12.62□□□□□ -0.39
USF1-201ENST00000368019 JADE2Q9NQC1 790 aa12.62□□□□□ -0.39
USF1-201ENST00000368019 XPNPEP3Q9NQH7 507 aa12.62□□□□□ -0.39
USF1-201ENST00000368019 GDF3Q9NR23 364 aa12.62□□□□□ -0.39
USF1-201ENST00000368019 BARHL2Q9NY43 387 aa12.62□□□□□ -0.39
USF1-201ENST00000368019 NYAP2Q9P242 653 aa12.62□□□□□ -0.39
USF1-201ENST00000368019 DNAJC25-GNG10A0A024R161 153 aa12.61□□□□□ -0.39
USF1-201ENST00000368019 IGKV6D-41A0A0C4DH26 115 aa12.61□□□□□ -0.39
USF1-201ENST00000368019 BTNL10A8MVZ5 291 aa12.61□□□□□ -0.39
USF1-201ENST00000368019 ZNF263O14978 683 aa12.61□□□□□ -0.39
USF1-201ENST00000368019 SRGAP2O75044 1071 aa12.61□□□□□ -0.39
USF1-201ENST00000368019 MYBL2P10244 700 aa12.61□□□□□ -0.39
USF1-201ENST00000368019 RARBP10826 455 aa12.61□□□□□ -0.39
USF1-201ENST00000368019 ITGB8P26012 769 aa12.61□□□□□ -0.39
USF1-201ENST00000368019 C2orf54Q08AI8 447 aa12.61□□□□□ -0.39
USF1-201ENST00000368019 KCTD2Q14681 263 aa12.61□□□□□ -0.39
USF1-201ENST00000368019 ASTE1Q2TB18 679 aaPredicted RBP12.61□□□□□ -0.39
USF1-201ENST00000368019 ANKRD40Q6AI12 368 aa12.61□□□□□ -0.39
USF1-201ENST00000368019 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.61□□□□□ -0.39
USF1-201ENST00000368019 RASSF8Q8NHQ8 419 aa12.61□□□□□ -0.39
USF1-201ENST00000368019 WHAMMQ8TF30 809 aa12.61□□□□□ -0.39
USF1-201ENST00000368019 CAPZA3Q96KX2 299 aa12.61□□□□□ -0.39
USF1-201ENST00000368019 TACO1Q9BSH4 297 aaKnown RBP12.61□□□□□ -0.39
USF1-201ENST00000368019 DEF6Q9H4E7 631 aa12.61□□□□□ -0.39
USF1-201ENST00000368019 ARHGAP20Q9P2F6 1191 aa12.61□□□□□ -0.39
USF1-201ENST00000368019 RIPK3Q9Y572 518 aa12.61□□□□□ -0.39
USF1-201ENST00000368019 hCG_1642624A0A1W2PR95 340 aa12.6□□□□□ -0.39
USF1-201ENST00000368019 PALM3A6NDB9 673 aaPredicted RBP12.6□□□□□ -0.39
USF1-201ENST00000368019 TSPY2A6NKD2 308 aa12.6□□□□□ -0.39
USF1-201ENST00000368019 VGLL3A8MV65 326 aa12.6□□□□□ -0.39
USF1-201ENST00000368019 F5H6K3 240 aa12.6□□□□□ -0.39
USF1-201ENST00000368019 STXBP3O00186 592 aa12.6□□□□□ -0.39
USF1-201ENST00000368019 ATP2A1O14983 1001 aa12.6□□□□□ -0.39
USF1-201ENST00000368019 ADAMTS4O75173 837 aa12.6□□□□□ -0.39
USF1-201ENST00000368019 ERLIN2O94905 339 aa12.6□□□□□ -0.39
USF1-201ENST00000368019 SNAI1O95863 264 aaPredicted RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms