RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 KLHL38Q2WGJ6 581 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 DEPDC1Q5TB30 811 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 WDR75Q8IWA0 830 aaKnown RBP7.8□□□□□ -1.16
SYNE1-208ENST00000367256 RNF139Q8WU17 664 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 BTBD18B2RXH4 712 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 PAPOLAP51003 745 aaKnown RBP7.8□□□□□ -1.16
SYNE1-208ENST00000367256 COPS2P61201 443 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 APOA5Q6Q788 366 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 TTC17Q96AE7 1141 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 DDX28Q9NUL7 540 aaKnown RBP7.8□□□□□ -1.16
SYNE1-208ENST00000367256 ZSCAN9O15535 394 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-208ENST00000367256 PJA2O43164 708 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 BLVRAP53004 296 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 TTC8Q8TAM2 541 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 ATP6V1G3Q96LB4 118 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 CCDC90BQ9GZT6 254 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 ADA2Q9NZK5 511 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 PAIP2BQ9ULR5 123 aaKnown RBP7.8□□□□□ -1.16
SYNE1-208ENST00000367256 CDK12Q9NYV4 1490 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-208ENST00000367256 PRDM15P57071 1507 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-208ENST00000367256 KPNA7A9QM74 516 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 KIF23Q02241 960 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-208ENST00000367256 EFTUD2Q15029 972 aaKnown RBP eCLIP7.79□□□□□ -1.16
SYNE1-208ENST00000367256 CDO1Q16878 200 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 RNF219Q5W0B1 726 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-208ENST00000367256 RESP18Q5W5W9 173 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 ZBTB33Q86T24 672 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 ARHGAP26Q9UNA1 814 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 TRAF3IP3Q9Y228 551 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 MYH6P13533 1939 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 SURF1Q15526 300 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 INO80B-WBP1J3KQ70 363 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 MMP1P03956 469 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 SPICE1Q8N0Z3 855 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 KCNV2Q8TDN2 545 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 MTRQ99707 1265 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 AMNQ9BXJ7 453 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 INO80BQ9C086 356 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-208ENST00000367256 PSD3Q9NYI0 1048 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 CPSF1Q10570 1443 aaKnown RBP7.79□□□□□ -1.16
SYNE1-208ENST00000367256 DAB1O75553 588 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 IFNAR1P17181 557 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 RANBP1P43487 201 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 BCAMP50895 628 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 RWDD2BP57060 319 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 MECOMQ03112 1051 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 AARS2Q5JTZ9 985 aaKnown RBP7.79□□□□□ -1.16
SYNE1-208ENST00000367256 C1orf228Q6PIY5 440 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 TOGARAM2Q6ZUX3 1019 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 GRAMD1CQ8IYS0 662 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 NDUFAF2Q8N183 169 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 WDR11Q9BZH6 1224 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 ERVV-2B6SEH9 535 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 CSPG5O95196 566 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 APOA1P02647 267 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 HSPA1AP0DMV8 641 aaKnown RBP7.79□□□□□ -1.16
SYNE1-208ENST00000367256 HSPA1BP0DMV9 641 aaKnown RBP7.79□□□□□ -1.16
SYNE1-208ENST00000367256 LRRC8BQ6P9F7 803 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 PATL1Q86TB9 770 aaKnown RBP7.79□□□□□ -1.16
SYNE1-208ENST00000367256 DPP9Q86TI2 863 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 TTC13Q8NBP0 860 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 B4GALNT2Q8NHY0 566 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 STK36Q9NRP7 1315 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 WDR47O94967 919 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 FGAP02671 866 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 UBXN2AP68543 259 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 THOC1Q96FV9 657 aaKnown RBP7.79□□□□□ -1.16
SYNE1-208ENST00000367256 RBM41Q96IZ5 413 aaKnown RBP7.79□□□□□ -1.16
SYNE1-208ENST00000367256 PARVGQ9HBI0 331 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 LRRC4Q9HBW1 653 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 GPBP1L1Q9HC44 474 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-208ENST00000367256 KLC4Q9NSK0 619 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 STXBP3O00186 592 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 ZNF263O14978 683 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 MXI1P50539 228 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 UBE3AQ05086 875 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 GRIN1Q05586 938 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 MTA3Q9BTC8 594 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.79□□□□□ -1.16
SYNE1-208ENST00000367256 E5RI56 91 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 GOLGA8MH3BSY2 632 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 EIF3DO15371 548 aaKnown RBP eCLIP7.79□□□□□ -1.16
SYNE1-208ENST00000367256 ARIH2O95376 493 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 PSAPP07602 524 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 KRT31Q15323 416 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 SLFN13Q68D06 897 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 FAM129AQ9BZQ8 928 aa7.79□□□□□ -1.16
SYNE1-208ENST00000367256 CLIC2O15247 247 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 ARPP19P56211 112 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 DCPSQ96C86 337 aaKnown RBP7.78□□□□□ -1.16
SYNE1-208ENST00000367256 NACC1Q96RE7 527 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 KIF2CQ99661 725 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 MSTO1Q9BUK6 570 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 YIPF3Q9GZM5 350 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 ADNPQ9H2P0 1102 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 SLC24A3Q9HC58 644 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 ATG3Q9NT62 314 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 FAM187AA6NFU0 413 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 PIK3R2O00459 728 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 ZSCAN20P17040 1043 aaPredicted RBP7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms