RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 VPS52Q8N1B4 723 aa12.48□□□□□ -0.41
SYNE1-204ENST00000367248 SCYL1Q96KG9 808 aa12.48□□□□□ -0.41
SYNE1-204ENST00000367248 SPTLC3Q9NUV7 552 aa12.48□□□□□ -0.41
SYNE1-204ENST00000367248 ZDHHC9Q9Y397 364 aa12.48□□□□□ -0.41
SYNE1-204ENST00000367248 RIMS1Q86UR5 1692 aaKnown RBP12.48□□□□□ -0.41
SYNE1-204ENST00000367248 LGALS16A8MUM7 142 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 C2CD2LO14523 706 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 TBX3O15119 743 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 FGFR2P21802 821 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 TGFB2P61812 414 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 HAUS6Q7Z4H7 955 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 TXNRD3Q86VQ6 643 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 PPP1R13BQ96KQ4 1090 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 NCAPGQ9BPX3 1015 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 NHEJ1Q9H9Q4 299 aaPredicted RBP12.47□□□□□ -0.41
SYNE1-204ENST00000367248 BUB1BO60566 1050 aaPredicted RBP12.47□□□□□ -0.41
SYNE1-204ENST00000367248 HUS1O60921 280 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 MAGOHBQ96A72 148 aaKnown RBP12.47□□□□□ -0.41
SYNE1-204ENST00000367248 MFAP3LO75121 409 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 NDUFA10O95299 355 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 KRT1P04264 644 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 PHBP35232 272 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 SCYL3Q8IZE3 742 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 ATP2A3Q93084 1043 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 SPATA17Q96L03 361 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 GLIS2Q9BZE0 524 aaPredicted RBP12.47□□□□□ -0.41
SYNE1-204ENST00000367248 PLCB1Q9NQ66 1216 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 ANAPC4Q9UJX5 808 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 ATP11BQ9Y2G3 1177 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 LRRD1A4D1F6 860 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 CCDC85CA6NKD9 419 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 PRCPP42785 496 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 XKR3Q5GH77 459 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 AFAP1L2Q8N4X5 818 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 PRMT6Q96LA8 375 aaPredicted RBP12.47□□□□□ -0.41
SYNE1-204ENST00000367248 JMJD4Q9H9V9 463 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 RGS16O15492 202 aaPredicted RBP12.47□□□□□ -0.41
SYNE1-204ENST00000367248 NFIAQ12857 509 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 GTF3C2Q8WUA4 911 aaPredicted RBP12.47□□□□□ -0.41
SYNE1-204ENST00000367248 ATG4CQ96DT6 458 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 KIF2CQ99661 725 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 IL25Q9H293 177 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 MOCS2O96007 188 aaPredicted RBP12.47□□□□□ -0.41
SYNE1-204ENST00000367248 SSTR3P32745 418 aaPredicted RBP12.47□□□□□ -0.41
SYNE1-204ENST00000367248 SEMA3FQ13275 785 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 PANX2Q96RD6 677 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 MAP3K14Q99558 947 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 CCSER1Q9C0I3 900 aa12.47□□□□□ -0.41
SYNE1-204ENST00000367248 ADARB2Q9NS39 739 aaKnown RBP12.47□□□□□ -0.41
SYNE1-204ENST00000367248 PGRMC1O00264 195 aaKnown RBP12.46□□□□□ -0.41
SYNE1-204ENST00000367248 GBP1P32455 592 aa12.46□□□□□ -0.41
SYNE1-204ENST00000367248 C10orf76Q5T2E6 689 aa12.46□□□□□ -0.41
SYNE1-204ENST00000367248 GIMAP7Q8NHV1 300 aa12.46□□□□□ -0.41
SYNE1-204ENST00000367248 SEPT1Q8WYJ6 367 aa12.46□□□□□ -0.41
SYNE1-204ENST00000367248 PPP2R3CQ969Q6 453 aa12.46□□□□□ -0.41
SYNE1-204ENST00000367248 GINM1Q9NU53 330 aa12.46□□□□□ -0.41
SYNE1-204ENST00000367248 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.46□□□□□ -0.41
SYNE1-204ENST00000367248 PTPN22Q9Y2R2 807 aa12.46□□□□□ -0.41
SYNE1-204ENST00000367248 TAF6LQ9Y6J9 622 aa12.46□□□□□ -0.41
SYNE1-204ENST00000367248 SLC25A27O95847 323 aa12.46□□□□□ -0.41
SYNE1-204ENST00000367248 ACTN1P12814 892 aa12.46□□□□□ -0.41
SYNE1-204ENST00000367248 SEPT6Q14141 434 aa12.46□□□□□ -0.41
SYNE1-204ENST00000367248 RABEP2Q9H5N1 569 aa12.46□□□□□ -0.41
SYNE1-204ENST00000367248 HSPA6P17066 643 aa12.46□□□□□ -0.41
SYNE1-204ENST00000367248 CXCL9Q07325 125 aa12.46□□□□□ -0.41
SYNE1-204ENST00000367248 NBPF9Q3BBW0 867 aa12.46□□□□□ -0.41
SYNE1-204ENST00000367248 ERICH1Q86X53 443 aa12.46□□□□□ -0.41
SYNE1-204ENST00000367248 TMEM35BQ8NCS4 154 aa12.46□□□□□ -0.41
SYNE1-204ENST00000367248 SENP2Q9HC62 589 aa12.46□□□□□ -0.41
SYNE1-204ENST00000367248 RGL1Q9NZL6 768 aa12.46□□□□□ -0.41
SYNE1-204ENST00000367248 FBXO2Q9UK22 296 aaPredicted RBP12.46□□□□□ -0.41
SYNE1-204ENST00000367248 SOWAHDA6NJG2 315 aa12.46□□□□□ -0.42
SYNE1-204ENST00000367248 SMARCA1P28370 1054 aa12.46□□□□□ -0.42
SYNE1-204ENST00000367248 FTCDO95954 541 aa12.46□□□□□ -0.42
SYNE1-204ENST00000367248 CEP85LQ5SZL2 805 aa12.46□□□□□ -0.42
SYNE1-204ENST00000367248 CC2D1AQ6P1N0 951 aaPredicted RBP12.46□□□□□ -0.42
SYNE1-204ENST00000367248 SARM1Q6SZW1 724 aa12.46□□□□□ -0.42
SYNE1-204ENST00000367248 PASD1Q8IV76 773 aa12.46□□□□□ -0.42
SYNE1-204ENST00000367248 SPDYE1Q8NFV5 336 aaPredicted RBP12.46□□□□□ -0.42
SYNE1-204ENST00000367248 RUNDC3BQ96NL0 473 aa12.46□□□□□ -0.42
SYNE1-204ENST00000367248 TUFT1Q9NNX1 390 aa12.46□□□□□ -0.42
SYNE1-204ENST00000367248 BCL9O00512 1426 aa12.46□□□□□ -0.42
SYNE1-204ENST00000367248 DGAT1O75907 488 aa12.46□□□□□ -0.42
SYNE1-204ENST00000367248 RECQLP46063 649 aaPredicted RBP12.46□□□□□ -0.42
SYNE1-204ENST00000367248 RNF149Q8NC42 400 aa12.46□□□□□ -0.42
SYNE1-204ENST00000367248 SCINQ9Y6U3 715 aa12.46□□□□□ -0.42
SYNE1-204ENST00000367248 I3L4J1 428 aa12.45□□□□□ -0.42
SYNE1-204ENST00000367248 GSTA1P08263 222 aa12.45□□□□□ -0.42
SYNE1-204ENST00000367248 GSTA2P09210 222 aa12.45□□□□□ -0.42
SYNE1-204ENST00000367248 PRR29P0C7W0 189 aa12.45□□□□□ -0.42
SYNE1-204ENST00000367248 EFNA5P52803 228 aa12.45□□□□□ -0.42
SYNE1-204ENST00000367248 KCNH2Q12809 1159 aa12.45□□□□□ -0.42
SYNE1-204ENST00000367248 NAALADL2Q58DX5 795 aa12.45□□□□□ -0.42
SYNE1-204ENST00000367248 RNF14Q9UBS8 474 aa12.45□□□□□ -0.42
SYNE1-204ENST00000367248 PRPSAP2O60256 369 aa12.45□□□□□ -0.42
SYNE1-204ENST00000367248 GUCY2DQ02846 1103 aa12.45□□□□□ -0.42
SYNE1-204ENST00000367248 AKT1S1Q96B36 256 aa12.45□□□□□ -0.42
SYNE1-204ENST00000367248 CEP72Q9P209 647 aa12.45□□□□□ -0.42
SYNE1-204ENST00000367248 SNX1Q13596 522 aa12.45□□□□□ -0.42
SYNE1-204ENST00000367248 DNAAF3Q8N9W5 541 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms