RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 CD248Q9HCU0 757 aa13.17□□□□□ -0.3
CLIP3-201ENST00000360535 TMEM59LQ9UK28 342 aa13.17□□□□□ -0.3
CLIP3-201ENST00000360535 SHBGP04278 402 aa13.17□□□□□ -0.3
CLIP3-201ENST00000360535 PSMC2P35998 433 aaKnown RBP13.17□□□□□ -0.3
CLIP3-201ENST00000360535 SETQ01105 290 aaPredicted RBP13.17□□□□□ -0.3
CLIP3-201ENST00000360535 MESDQ14696 234 aa13.17□□□□□ -0.3
CLIP3-201ENST00000360535 NBPF9Q3BBW0 867 aa13.17□□□□□ -0.3
CLIP3-201ENST00000360535 LRCH2Q5VUJ6 765 aa13.17□□□□□ -0.3
CLIP3-201ENST00000360535 RUFY4Q6ZNE9 571 aa13.17□□□□□ -0.3
CLIP3-201ENST00000360535 MREGQ8N565 214 aa13.17□□□□□ -0.3
CLIP3-201ENST00000360535 SLC20A1Q8WUM9 679 aa13.17□□□□□ -0.3
CLIP3-201ENST00000360535 FMO2Q99518 471 aa13.17□□□□□ -0.3
CLIP3-201ENST00000360535 NAP1L4Q99733 375 aaKnown RBP13.17□□□□□ -0.3
CLIP3-201ENST00000360535 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.17□□□□□ -0.3
CLIP3-201ENST00000360535 FRMD4BQ9Y2L6 1034 aa13.17□□□□□ -0.3
CLIP3-201ENST00000360535 HGSO14964 777 aaPredicted RBP13.16□□□□□ -0.3
CLIP3-201ENST00000360535 FAM107AO95990 144 aa13.16□□□□□ -0.3
CLIP3-201ENST00000360535 FERP16591 822 aa13.16□□□□□ -0.3
CLIP3-201ENST00000360535 SOX5P35711 763 aa13.16□□□□□ -0.3
CLIP3-201ENST00000360535 IFNAR2P48551 515 aa13.16□□□□□ -0.3
CLIP3-201ENST00000360535 PPP2R2AP63151 447 aa13.16□□□□□ -0.3
CLIP3-201ENST00000360535 C10orf76Q5T2E6 689 aa13.16□□□□□ -0.3
CLIP3-201ENST00000360535 C15orf52Q6ZUT6 534 aaKnown RBP13.16□□□□□ -0.3
CLIP3-201ENST00000360535 HS2ST1Q7LGA3 356 aa13.16□□□□□ -0.3
CLIP3-201ENST00000360535 TAX1BP1Q86VP1 789 aa13.16□□□□□ -0.3
CLIP3-201ENST00000360535 COA1Q9GZY4 146 aa13.16□□□□□ -0.3
CLIP3-201ENST00000360535 TMX4Q9H1E5 349 aaPredicted RBP13.16□□□□□ -0.3
CLIP3-201ENST00000360535 CAND2O75155 1236 aa13.16□□□□□ -0.3
CLIP3-201ENST00000360535 FMO5P49326 533 aa13.16□□□□□ -0.3
CLIP3-201ENST00000360535 DR1Q01658 176 aa13.16□□□□□ -0.3
CLIP3-201ENST00000360535 ACTN3Q08043 901 aaPredicted RBP13.16□□□□□ -0.3
CLIP3-201ENST00000360535 ABCB5Q2M3G0 1257 aa13.16□□□□□ -0.3
CLIP3-201ENST00000360535 DPY19L2P1Q6NXN4 242 aa13.16□□□□□ -0.3
CLIP3-201ENST00000360535 PHLDB2Q86SQ0 1253 aa13.16□□□□□ -0.3
CLIP3-201ENST00000360535 SYCE1Q8N0S2 351 aa13.16□□□□□ -0.3
CLIP3-201ENST00000360535 RAPGEF5Q92565 580 aa13.16□□□□□ -0.3
CLIP3-201ENST00000360535 LENG9Q96B70 501 aa13.16□□□□□ -0.3
CLIP3-201ENST00000360535 UBE2TQ9NPD8 197 aaPredicted RBP13.16□□□□□ -0.3
CLIP3-201ENST00000360535 FRMD3A2A2Y4 597 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 FOXN3O00409 490 aaPredicted RBP13.15□□□□□ -0.3
CLIP3-201ENST00000360535 CLSTN1O94985 981 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 GUCY2CP25092 1073 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 MARCKSL1P49006 195 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 SPRED3Q2MJR0 410 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 CRY2Q49AN0 593 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 CCDC38Q502W7 563 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 UBAP2Q5T6F2 1119 aaKnown RBP13.15□□□□□ -0.3
CLIP3-201ENST00000360535 SYDE2Q5VT97 1194 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 TMC3Q7Z5M5 1100 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 C18orf8Q96DM3 657 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 BTBD6Q96KE9 485 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 TDRD3Q9H7E2 651 aaKnown RBP13.15□□□□□ -0.3
CLIP3-201ENST00000360535 DDX20Q9UHI6 824 aaKnown RBP13.15□□□□□ -0.3
CLIP3-201ENST00000360535 DAAM1Q9Y4D1 1078 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 WNK3Q9BYP7 1800 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 A6NNZ2 444 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 F8VZ95 297 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 H0YGN5 161 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 ECE1P42892 770 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 TUBB8Q3ZCM7 444 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 MCTP2Q6DN12 878 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 CEP57Q86XR8 500 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 CD302Q8IX05 232 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 DNAJC17Q9NVM6 304 aaKnown RBP13.15□□□□□ -0.3
CLIP3-201ENST00000360535 NFS1Q9Y697 457 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 CCDC188H7C350 402 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 CTNND1O60716 968 aaKnown RBP13.15□□□□□ -0.3
CLIP3-201ENST00000360535 GAS7O60861 476 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 KCNJ1P48048 391 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 JAG1P78504 1218 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 DCAF12L1Q5VU92 463 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 ARHGAP27Q6ZUM4 889 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 CPNE8Q86YQ8 564 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 MGARPQ8TDB4 240 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 PARVGQ9HBI0 331 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 SUCLA2Q9P2R7 463 aaPredicted RBP13.15□□□□□ -0.3
CLIP3-201ENST00000360535 GGT7Q9UJ14 662 aa13.15□□□□□ -0.3
CLIP3-201ENST00000360535 ARFGEF1Q9Y6D6 1849 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 GOLGA8IPA6NC78 632 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 GOLGA8JA6NMD2 632 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 EYA4O95677 639 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 CPP00450 1065 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 BMP3P12645 472 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 GCLMP48507 274 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 CDR1P51861 262 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 DLG4P78352 724 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 MYL7Q01449 175 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 EPM2AIP1Q7L775 607 aaPredicted RBP13.14□□□□□ -0.31
CLIP3-201ENST00000360535 SIAH1Q8IUQ4 282 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 CCDC13Q8IYE1 715 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 ALG3Q92685 438 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 KRT35Q92764 455 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 CCDC17Q96LX7 622 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 SCLT1Q96NL6 688 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 INTS2Q9H0H0 1204 aaKnown RBP13.14□□□□□ -0.31
CLIP3-201ENST00000360535 MYO3BQ8WXR4 1341 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 GOLGA6L10A0A0M3HER8 536 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 AP3B2Q13367 1082 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 MSL1Q68DK7 614 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 NSMFQ6X4W1 530 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms