RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 ERAP1Q9NZ08 941 aa20.58■□□□□ 0.89
CLN3-204ENST00000357857 GABRQQ9UN88 632 aa20.58■□□□□ 0.89
CLN3-204ENST00000357857 TRAF3IP3Q9Y228 551 aa20.58■□□□□ 0.89
CLN3-204ENST00000357857 LRRC10BA6NIK2 292 aa20.58■□□□□ 0.88
CLN3-204ENST00000357857 CALUO43852 315 aaPredicted RBP20.58■□□□□ 0.88
CLN3-204ENST00000357857 TRPA1O75762 1119 aa20.58■□□□□ 0.88
CLN3-204ENST00000357857 COPB1P53618 953 aaKnown RBP20.58■□□□□ 0.88
CLN3-204ENST00000357857 SOX10P56693 466 aa20.58■□□□□ 0.88
CLN3-204ENST00000357857 RTP1P59025 263 aa20.58■□□□□ 0.88
CLN3-204ENST00000357857 KCNA1Q09470 495 aa20.58■□□□□ 0.88
CLN3-204ENST00000357857 POLR3FQ9H1D9 316 aaPredicted RBP20.58■□□□□ 0.88
CLN3-204ENST00000357857 ST6GALNAC4Q9H4F1 302 aa20.58■□□□□ 0.88
CLN3-204ENST00000357857 TAB2Q9NYJ8 693 aa20.58■□□□□ 0.88
CLN3-204ENST00000357857 THSD7BQ9C0I4 1608 aa20.58■□□□□ 0.88
CLN3-204ENST00000357857 PPFIA4O75335 1185 aa20.57■□□□□ 0.88
CLN3-204ENST00000357857 MMP3P08254 477 aa20.57■□□□□ 0.88
CLN3-204ENST00000357857 FLT3LGP49771 235 aa20.57■□□□□ 0.88
CLN3-204ENST00000357857 SMTNP53814 917 aa20.57■□□□□ 0.88
CLN3-204ENST00000357857 NCKAP1LP55160 1127 aa20.57■□□□□ 0.88
CLN3-204ENST00000357857 NR1I3Q14994 352 aa20.57■□□□□ 0.88
CLN3-204ENST00000357857 CEP63Q96MT8 703 aa20.57■□□□□ 0.88
CLN3-204ENST00000357857 TRPC6Q9Y210 931 aa20.57■□□□□ 0.88
CLN3-204ENST00000357857 GNEQ9Y223 722 aaKnown RBP20.57■□□□□ 0.88
CLN3-204ENST00000357857 ZMYM2Q9UBW7 1377 aa20.57■□□□□ 0.88
CLN3-204ENST00000357857 HBP1O60381 514 aa20.56■□□□□ 0.88
CLN3-204ENST00000357857 HOXD8P13378 290 aaPredicted RBP20.56■□□□□ 0.88
CLN3-204ENST00000357857 NPTX2P47972 431 aa20.56■□□□□ 0.88
CLN3-204ENST00000357857 HTRA3P83110 453 aa20.56■□□□□ 0.88
CLN3-204ENST00000357857 TMC6Q7Z403 805 aa20.56■□□□□ 0.88
CLN3-204ENST00000357857 HAUS6Q7Z4H7 955 aa20.56■□□□□ 0.88
CLN3-204ENST00000357857 KSR1Q8IVT5 923 aa20.56■□□□□ 0.88
CLN3-204ENST00000357857 ZC3H3Q8IXZ2 948 aaKnown RBP20.56■□□□□ 0.88
CLN3-204ENST00000357857 SPIRE2Q8WWL2 714 aa20.56■□□□□ 0.88
CLN3-204ENST00000357857 BSNDQ8WZ55 320 aa20.56■□□□□ 0.88
CLN3-204ENST00000357857 IFT74Q96LB3 600 aa20.56■□□□□ 0.88
CLN3-204ENST00000357857 VPS16Q9H269 839 aa20.56■□□□□ 0.88
CLN3-204ENST00000357857 RTN4Q9NQC3 1192 aaKnown RBP20.56■□□□□ 0.88
CLN3-204ENST00000357857 CCDC169A6NNP5 214 aa20.56■□□□□ 0.88
CLN3-204ENST00000357857 N4BP3O15049 544 aa20.56■□□□□ 0.88
CLN3-204ENST00000357857 SLC16A4O15374 487 aa20.56■□□□□ 0.88
CLN3-204ENST00000357857 MAFO75444 373 aaPredicted RBP20.56■□□□□ 0.88
CLN3-204ENST00000357857 PRKCZQ05513 592 aa20.56■□□□□ 0.88
CLN3-204ENST00000357857 TBC1D8BQ0IIM8 1120 aa20.56■□□□□ 0.88
CLN3-204ENST00000357857 HS1BP3Q53T59 392 aa20.56■□□□□ 0.88
CLN3-204ENST00000357857 MFSD14CQ5VZR4 134 aa20.56■□□□□ 0.88
CLN3-204ENST00000357857 VSTM4Q8IW00 320 aa20.56■□□□□ 0.88
CLN3-204ENST00000357857 EXOC8Q8IYI6 725 aa20.56■□□□□ 0.88
CLN3-204ENST00000357857 KMT5AQ9NQR1 393 aa20.56■□□□□ 0.88
CLN3-204ENST00000357857 NRBP1Q9UHY1 535 aa20.56■□□□□ 0.88
CLN3-204ENST00000357857 FAM184BQ9ULE4 1060 aa20.56■□□□□ 0.88
CLN3-204ENST00000357857 ZBTB42B2RXF5 422 aa20.55■□□□□ 0.88
CLN3-204ENST00000357857 DYNC1LI2O43237 492 aaPredicted RBP20.55■□□□□ 0.88
CLN3-204ENST00000357857 TGFB1I1O43294 461 aa20.55■□□□□ 0.88
CLN3-204ENST00000357857 ZNF286BP0CG31 522 aa20.55■□□□□ 0.88
CLN3-204ENST00000357857 MTIF2P46199 727 aaKnown RBP20.55■□□□□ 0.88
CLN3-204ENST00000357857 GTF2BQ00403 316 aa20.55■□□□□ 0.88
CLN3-204ENST00000357857 ADAM9Q13443 819 aa20.55■□□□□ 0.88
CLN3-204ENST00000357857 DGKDQ16760 1214 aa20.55■□□□□ 0.88
CLN3-204ENST00000357857 FILIP1Q7Z7B0 1213 aa20.55■□□□□ 0.88
CLN3-204ENST00000357857 TMEM143Q96AN5 459 aa20.55■□□□□ 0.88
CLN3-204ENST00000357857 ACCSQ96QU6 501 aa20.55■□□□□ 0.88
CLN3-204ENST00000357857 NTPCRQ9BSD7 190 aaKnown RBP20.55■□□□□ 0.88
CLN3-204ENST00000357857 C16orf70Q9BSU1 422 aa20.55■□□□□ 0.88
CLN3-204ENST00000357857 KCNG1Q9UIX4 513 aa20.55■□□□□ 0.88
CLN3-204ENST00000357857 ZNF215Q9UL58 517 aaPredicted RBP20.55■□□□□ 0.88
CLN3-204ENST00000357857 KAT6AQ92794 2004 aa20.55■□□□□ 0.88
CLN3-204ENST00000357857 CETN3O15182 167 aa20.54■□□□□ 0.88
CLN3-204ENST00000357857 TPM2P07951 284 aa20.54■□□□□ 0.88
CLN3-204ENST00000357857 NR2F2P24468 414 aa20.54■□□□□ 0.88
CLN3-204ENST00000357857 ARL2P36404 184 aa20.54■□□□□ 0.88
CLN3-204ENST00000357857 CAP1Q01518 475 aa20.54■□□□□ 0.88
CLN3-204ENST00000357857 HS2ST1Q7LGA3 356 aa20.54■□□□□ 0.88
CLN3-204ENST00000357857 TLK2Q86UE8 772 aa20.54■□□□□ 0.88
CLN3-204ENST00000357857 SYCP3Q8IZU3 236 aa20.54■□□□□ 0.88
CLN3-204ENST00000357857 TMEM161BQ8NDZ6 487 aa20.54■□□□□ 0.88
CLN3-204ENST00000357857 TRIB2Q92519 343 aa20.54■□□□□ 0.88
CLN3-204ENST00000357857 HVCN1Q96D96 273 aa20.54■□□□□ 0.88
CLN3-204ENST00000357857 TUBGCP2Q9BSJ2 902 aa20.54■□□□□ 0.88
CLN3-204ENST00000357857 GBP3Q9H0R5 595 aa20.54■□□□□ 0.88
CLN3-204ENST00000357857 RNPEPQ9H4A4 650 aa20.54■□□□□ 0.88
CLN3-204ENST00000357857 TMEM206Q9H813 350 aa20.54■□□□□ 0.88
CLN3-204ENST00000357857 IMPACTQ9P2X3 320 aa20.54■□□□□ 0.88
CLN3-204ENST00000357857 EVPLQ92817 2033 aa20.54■□□□□ 0.88
CLN3-204ENST00000357857 TEX33O43247 280 aa20.53■□□□□ 0.88
CLN3-204ENST00000357857 GAS2O43903 313 aaKnown RBP20.53■□□□□ 0.88
CLN3-204ENST00000357857 GNA14O95837 355 aa20.53■□□□□ 0.88
CLN3-204ENST00000357857 NR3C1P04150 777 aa20.53■□□□□ 0.88
CLN3-204ENST00000357857 PRKCSHP14314 528 aaPredicted RBP20.53■□□□□ 0.88
CLN3-204ENST00000357857 RPL13P26373 211 aaKnown RBP20.53■□□□□ 0.88
CLN3-204ENST00000357857 NFIL3Q16649 462 aa20.53■□□□□ 0.88
CLN3-204ENST00000357857 ZNF484Q5JVG2 852 aa20.53■□□□□ 0.88
CLN3-204ENST00000357857 GOLGA5Q8TBA6 731 aa20.53■□□□□ 0.88
CLN3-204ENST00000357857 JPH2Q9BR39 696 aaPredicted RBP20.53■□□□□ 0.88
CLN3-204ENST00000357857 Q9Y3F1 56 aa20.53■□□□□ 0.88
CLN3-204ENST00000357857 SIP14410 1827 aa20.53■□□□□ 0.88
CLN3-204ENST00000357857 A6NJR5 290 aa20.53■□□□□ 0.88
CLN3-204ENST00000357857 PPP2R5AQ15172 486 aa20.53■□□□□ 0.88
CLN3-204ENST00000357857 CCDC40Q4G0X9 1142 aa20.53■□□□□ 0.88
CLN3-204ENST00000357857 CCDC186Q7Z3E2 898 aa20.53■□□□□ 0.88
CLN3-204ENST00000357857 ASAP3Q8TDY4 903 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms