RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 ADGRG1Q9Y653 693 aa12.6□□□□□ -0.39
COL9A1-202ENST00000357250 COL3A1P02461 1466 aaPredicted RBP12.59□□□□□ -0.39
COL9A1-202ENST00000357250 TARSL2A2RTX5 802 aaKnown RBP12.59□□□□□ -0.39
COL9A1-202ENST00000357250 KIAA0391O15091 583 aaKnown RBP12.59□□□□□ -0.39
COL9A1-202ENST00000357250 COASYQ13057 564 aa12.59□□□□□ -0.39
COL9A1-202ENST00000357250 BIRC2Q13490 618 aa12.59□□□□□ -0.39
COL9A1-202ENST00000357250 CTTNQ14247 550 aaKnown RBP12.59□□□□□ -0.39
COL9A1-202ENST00000357250 TXNRD1Q16881 649 aa12.59□□□□□ -0.39
COL9A1-202ENST00000357250 CC2D1AQ6P1N0 951 aaPredicted RBP12.59□□□□□ -0.39
COL9A1-202ENST00000357250 VPS39Q96JC1 886 aa12.59□□□□□ -0.39
COL9A1-202ENST00000357250 CCSER1Q9C0I3 900 aa12.59□□□□□ -0.39
COL9A1-202ENST00000357250 C2orf40Q9H1Z8 148 aa12.59□□□□□ -0.39
COL9A1-202ENST00000357250 HOXC10Q9NYD6 342 aa12.59□□□□□ -0.39
COL9A1-202ENST00000357250 RIMS1Q86UR5 1692 aaKnown RBP12.59□□□□□ -0.39
COL9A1-202ENST00000357250 SPATA31A1Q5TZJ5 1347 aa12.59□□□□□ -0.39
COL9A1-202ENST00000357250 KRT38O76015 456 aa12.59□□□□□ -0.39
COL9A1-202ENST00000357250 P4HBP07237 508 aaKnown RBP12.59□□□□□ -0.39
COL9A1-202ENST00000357250 CHRNA3P32297 505 aa12.59□□□□□ -0.39
COL9A1-202ENST00000357250 PPARGP37231 505 aaPredicted RBP12.59□□□□□ -0.39
COL9A1-202ENST00000357250 CRKP46108 304 aa12.59□□□□□ -0.39
COL9A1-202ENST00000357250 EXOSC10Q01780 885 aaKnown RBP12.59□□□□□ -0.39
COL9A1-202ENST00000357250 PPARDQ03181 441 aa12.59□□□□□ -0.39
COL9A1-202ENST00000357250 DEUP1Q05D60 604 aa12.59□□□□□ -0.39
COL9A1-202ENST00000357250 KCNH2Q12809 1159 aa12.59□□□□□ -0.39
COL9A1-202ENST00000357250 FAM83BQ5T0W9 1011 aa12.59□□□□□ -0.39
COL9A1-202ENST00000357250 RASIP1Q5U651 963 aa12.59□□□□□ -0.39
COL9A1-202ENST00000357250 ZNF449Q6P9G9 518 aa12.59□□□□□ -0.39
COL9A1-202ENST00000357250 TTLL6Q8N841 843 aa12.59□□□□□ -0.39
COL9A1-202ENST00000357250 GOLPH3LQ9H4A5 285 aa12.59□□□□□ -0.39
COL9A1-202ENST00000357250 CNOT8Q9UFF9 292 aaKnown RBP12.59□□□□□ -0.39
COL9A1-202ENST00000357250 NFU1Q9UMS0 254 aa12.59□□□□□ -0.39
COL9A1-202ENST00000357250 PALMO75781 387 aa12.59□□□□□ -0.39
COL9A1-202ENST00000357250 NFKBIAP25963 317 aa12.59□□□□□ -0.39
COL9A1-202ENST00000357250 PEX3P56589 373 aa12.59□□□□□ -0.39
COL9A1-202ENST00000357250 KLHL38Q2WGJ6 581 aa12.59□□□□□ -0.39
COL9A1-202ENST00000357250 TRIM68Q6AZZ1 485 aa12.59□□□□□ -0.39
COL9A1-202ENST00000357250 PADI6Q6TGC4 694 aa12.59□□□□□ -0.39
COL9A1-202ENST00000357250 SFR1Q86XK3 245 aa12.59□□□□□ -0.39
COL9A1-202ENST00000357250 TOPORSQ9NS56 1045 aaPredicted RBP12.59□□□□□ -0.39
COL9A1-202ENST00000357250 ANGPTL3Q9Y5C1 460 aa12.59□□□□□ -0.39
COL9A1-202ENST00000357250 DEPDC5O75140 1603 aa12.58□□□□□ -0.39
COL9A1-202ENST00000357250 ESYT2A0FGR8 921 aa12.58□□□□□ -0.39
COL9A1-202ENST00000357250 ABL1P00519 1130 aa12.58□□□□□ -0.39
COL9A1-202ENST00000357250 GH2P01242 217 aa12.58□□□□□ -0.39
COL9A1-202ENST00000357250 COPB2P35606 906 aa12.58□□□□□ -0.39
COL9A1-202ENST00000357250 MTMR1Q13613 665 aa12.58□□□□□ -0.39
COL9A1-202ENST00000357250 BBS9Q3SYG4 887 aa12.58□□□□□ -0.39
COL9A1-202ENST00000357250 SENP2Q9HC62 589 aa12.58□□□□□ -0.39
COL9A1-202ENST00000357250 ASNSD1Q9NWL6 643 aa12.58□□□□□ -0.39
COL9A1-202ENST00000357250 LRRC53A6NM62 1247 aa12.58□□□□□ -0.4
COL9A1-202ENST00000357250 EIF2AK2P19525 551 aaKnown RBP12.58□□□□□ -0.4
COL9A1-202ENST00000357250 ZKSCAN8Q15776 578 aaPredicted RBP12.58□□□□□ -0.4
COL9A1-202ENST00000357250 STXBP2Q15833 593 aa12.58□□□□□ -0.4
COL9A1-202ENST00000357250 ZNF34Q8IZ26 560 aa12.58□□□□□ -0.4
COL9A1-202ENST00000357250 CYP26B1Q9NR63 512 aa12.58□□□□□ -0.4
COL9A1-202ENST00000357250 PACSIN2Q9UNF0 486 aaPredicted RBP12.58□□□□□ -0.4
COL9A1-202ENST00000357250 USP17L5A8MUK1 530 aa12.58□□□□□ -0.4
COL9A1-202ENST00000357250 ESRRGP62508 458 aa12.58□□□□□ -0.4
COL9A1-202ENST00000357250 KLC3Q6P597 504 aa12.58□□□□□ -0.4
COL9A1-202ENST00000357250 NSUN6Q8TEA1 469 aaKnown RBP12.58□□□□□ -0.4
COL9A1-202ENST00000357250 PPFIA2O75334 1257 aa12.58□□□□□ -0.4
COL9A1-202ENST00000357250 SAT1P21673 171 aa12.58□□□□□ -0.4
COL9A1-202ENST00000357250 IQCB1Q15051 598 aa12.58□□□□□ -0.4
COL9A1-202ENST00000357250 TERF2Q15554 542 aa12.58□□□□□ -0.4
COL9A1-202ENST00000357250 MAPK6Q16659 721 aa12.58□□□□□ -0.4
COL9A1-202ENST00000357250 FRMD5Q7Z6J6 570 aa12.58□□□□□ -0.4
COL9A1-202ENST00000357250 TDRD3Q9H7E2 651 aaKnown RBP12.58□□□□□ -0.4
COL9A1-202ENST00000357250 PSMA2P25787 234 aa12.57□□□□□ -0.4
COL9A1-202ENST00000357250 GUCY1A2P33402 732 aa12.57□□□□□ -0.4
COL9A1-202ENST00000357250 GPSM2P81274 684 aa12.57□□□□□ -0.4
COL9A1-202ENST00000357250 TOGARAM2Q6ZUX3 1019 aa12.57□□□□□ -0.4
COL9A1-202ENST00000357250 WDR75Q8IWA0 830 aaKnown RBP12.57□□□□□ -0.4
COL9A1-202ENST00000357250 ARHGEF28Q8N1W1 1705 aaKnown RBP12.57□□□□□ -0.4
COL9A1-202ENST00000357250 HEXIM2Q96MH2 286 aaKnown RBP12.57□□□□□ -0.4
COL9A1-202ENST00000357250 WNT8AQ9H1J5 351 aa12.57□□□□□ -0.4
COL9A1-202ENST00000357250 HERC5Q9UII4 1024 aaKnown RBP12.57□□□□□ -0.4
COL9A1-202ENST00000357250 ANAPC7Q9UJX3 599 aa12.57□□□□□ -0.4
COL9A1-202ENST00000357250 PLAAQ9Y263 795 aa12.57□□□□□ -0.4
COL9A1-202ENST00000357250 TAP1Q03518 808 aa12.57□□□□□ -0.4
COL9A1-202ENST00000357250 RCN2Q14257 317 aa12.57□□□□□ -0.4
COL9A1-202ENST00000357250 APOL6Q9BWW8 343 aa12.57□□□□□ -0.4
COL9A1-202ENST00000357250 CAPN11Q9UMQ6 739 aa12.57□□□□□ -0.4
COL9A1-202ENST00000357250 SYNJ2BP-COX16A0A087WUM0 186 aa12.57□□□□□ -0.4
COL9A1-202ENST00000357250 CLDN3O15551 220 aa12.57□□□□□ -0.4
COL9A1-202ENST00000357250 ZBTB7AO95365 584 aa12.57□□□□□ -0.4
COL9A1-202ENST00000357250 KRT7P08729 469 aa12.57□□□□□ -0.4
COL9A1-202ENST00000357250 ESRRAP11474 423 aaPredicted RBP12.57□□□□□ -0.4
COL9A1-202ENST00000357250 CIITAP33076 1130 aa12.57□□□□□ -0.4
COL9A1-202ENST00000357250 QARSP47897 775 aaKnown RBP12.57□□□□□ -0.4
COL9A1-202ENST00000357250 KYAT1Q16773 422 aa12.57□□□□□ -0.4
COL9A1-202ENST00000357250 CLEC10AQ8IUN9 316 aa12.57□□□□□ -0.4
COL9A1-202ENST00000357250 CCDC124Q96CT7 223 aaKnown RBP12.57□□□□□ -0.4
COL9A1-202ENST00000357250 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.57□□□□□ -0.4
COL9A1-202ENST00000357250 AP1M1Q9BXS5 423 aa12.57□□□□□ -0.4
COL9A1-202ENST00000357250 ZNF341Q9BYN7 854 aa12.57□□□□□ -0.4
COL9A1-202ENST00000357250 COX16Q9P0S2 106 aa12.57□□□□□ -0.4
COL9A1-202ENST00000357250 LIMA1Q9UHB6 759 aaKnown RBP12.57□□□□□ -0.4
COL9A1-202ENST00000357250 ADAM21Q9UKJ8 722 aa12.57□□□□□ -0.4
COL9A1-202ENST00000357250 ITIH6Q6UXX5 1313 aa12.57□□□□□ -0.4
COL9A1-202ENST00000357250 PAMP19021 973 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms