RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 NQO1P15559 274 aaKnown RBP13.42□□□□□ -0.26
COL6A3-203ENST00000353578 PTGISQ16647 500 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 ENOPH1Q9UHY7 261 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 USTQ9Y2C2 406 aa13.42□□□□□ -0.26
COL6A3-203ENST00000353578 POLR2FP61218 127 aaKnown RBP13.41□□□□□ -0.26
COL6A3-203ENST00000353578 RASSF5Q8WWW0 418 aa13.41□□□□□ -0.26
COL6A3-203ENST00000353578 SMARCAL1Q9NZC9 954 aa13.41□□□□□ -0.26
COL6A3-203ENST00000353578 ATXN10Q9UBB4 475 aa13.41□□□□□ -0.26
COL6A3-203ENST00000353578 OTUD6AQ7L8S5 288 aa13.41□□□□□ -0.26
COL6A3-203ENST00000353578 TADA1Q96BN2 335 aa13.41□□□□□ -0.26
COL6A3-203ENST00000353578 RNF26Q9BY78 433 aaPredicted RBP13.41□□□□□ -0.26
COL6A3-203ENST00000353578 VAT1LQ9HCJ6 419 aa13.41□□□□□ -0.26
COL6A3-203ENST00000353578 TCP11X1B4DZS4 312 aa13.41□□□□□ -0.26
COL6A3-203ENST00000353578 NR5A1Q13285 461 aa13.41□□□□□ -0.26
COL6A3-203ENST00000353578 TTC33Q6PID6 262 aaPredicted RBP13.41□□□□□ -0.26
COL6A3-203ENST00000353578 PPP1R2P1Q96PQ5 205 aa13.41□□□□□ -0.26
COL6A3-203ENST00000353578 CDK13Q14004 1512 aaKnown RBP13.41□□□□□ -0.26
COL6A3-203ENST00000353578 SCTRP47872 440 aa13.41□□□□□ -0.26
COL6A3-203ENST00000353578 MIGA1Q8NAN2 632 aa13.41□□□□□ -0.26
COL6A3-203ENST00000353578 GSTA3Q16772 222 aa13.41□□□□□ -0.26
COL6A3-203ENST00000353578 SPOPLQ6IQ16 392 aa13.41□□□□□ -0.26
COL6A3-203ENST00000353578 SERTAD1Q9UHV2 236 aa13.41□□□□□ -0.26
COL6A3-203ENST00000353578 POTEFA5A3E0 1075 aa13.41□□□□□ -0.26
COL6A3-203ENST00000353578 POTEIP0CG38 1075 aa13.41□□□□□ -0.26
COL6A3-203ENST00000353578 ILF2Q12905 390 aaKnown RBP13.41□□□□□ -0.26
COL6A3-203ENST00000353578 ADAM9Q13443 819 aa13.41□□□□□ -0.26
COL6A3-203ENST00000353578 CTTNQ14247 550 aaKnown RBP13.41□□□□□ -0.26
COL6A3-203ENST00000353578 POTEEQ6S8J3 1075 aa13.41□□□□□ -0.26
COL6A3-203ENST00000353578 C11orf57Q6ZUT1 292 aaPredicted RBP13.41□□□□□ -0.26
COL6A3-203ENST00000353578 BBS5Q8N3I7 341 aa13.41□□□□□ -0.26
COL6A3-203ENST00000353578 OTULINQ96BN8 352 aa13.41□□□□□ -0.26
COL6A3-203ENST00000353578 DGCR14Q96DF8 476 aaKnown RBP13.41□□□□□ -0.26
COL6A3-203ENST00000353578 ABCB1P08183 1280 aaPredicted RBP13.41□□□□□ -0.26
COL6A3-203ENST00000353578 DMP1Q13316 513 aaPredicted RBP13.41□□□□□ -0.26
COL6A3-203ENST00000353578 RUNDC3AQ59EK9 446 aa13.41□□□□□ -0.26
COL6A3-203ENST00000353578 SRGAP2CP0DJJ0 459 aa13.4□□□□□ -0.26
COL6A3-203ENST00000353578 H2AFXP16104 143 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-203ENST00000353578 PSMC3P17980 439 aa13.4□□□□□ -0.26
COL6A3-203ENST00000353578 ATN1P54259 1190 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-203ENST00000353578 LRRC49Q8IUZ0 686 aa13.4□□□□□ -0.26
COL6A3-203ENST00000353578 MYL7Q01449 175 aa13.4□□□□□ -0.26
COL6A3-203ENST00000353578 KCNV2Q8TDN2 545 aa13.4□□□□□ -0.26
COL6A3-203ENST00000353578 RNF34Q969K3 372 aa13.4□□□□□ -0.26
COL6A3-203ENST00000353578 BRAFP15056 766 aa13.4□□□□□ -0.26
COL6A3-203ENST00000353578 HP1BP3Q5SSJ5 553 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-203ENST00000353578 KRT73Q86Y46 540 aa13.4□□□□□ -0.26
COL6A3-203ENST00000353578 LPXNO60711 386 aa13.4□□□□□ -0.26
COL6A3-203ENST00000353578 PREPLQ4J6C6 727 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-203ENST00000353578 GPR101Q96P66 508 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-203ENST00000353578 XPO6Q96QU8 1125 aaKnown RBP13.4□□□□□ -0.26
COL6A3-203ENST00000353578 R3HDM2Q9Y2K5 976 aaKnown RBP13.4□□□□□ -0.26
COL6A3-203ENST00000353578 CFAP99D6REC4 459 aa13.4□□□□□ -0.26
COL6A3-203ENST00000353578 TLR3O15455 904 aaKnown RBP13.4□□□□□ -0.26
COL6A3-203ENST00000353578 EIF4A3P38919 411 aaKnown RBP13.4□□□□□ -0.26
COL6A3-203ENST00000353578 LONP2Q86WA8 852 aa13.4□□□□□ -0.26
COL6A3-203ENST00000353578 EXOC8Q8IYI6 725 aa13.4□□□□□ -0.26
COL6A3-203ENST00000353578 NSL1Q96IY1 281 aa13.4□□□□□ -0.26
COL6A3-203ENST00000353578 NEUROG2Q9H2A3 272 aa13.4□□□□□ -0.26
COL6A3-203ENST00000353578 ATP8A2Q9NTI2 1148 aa13.4□□□□□ -0.26
COL6A3-203ENST00000353578 MCM9Q9NXL9 1143 aa13.4□□□□□ -0.26
COL6A3-203ENST00000353578 IGF2BP3O00425 579 aaKnown RBP eCLIP13.4□□□□□ -0.26
COL6A3-203ENST00000353578 DNALI1O14645 258 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-203ENST00000353578 MSL3P1P0C860 447 aa13.4□□□□□ -0.26
COL6A3-203ENST00000353578 GORASP1Q9BQQ3 440 aa13.4□□□□□ -0.26
COL6A3-203ENST00000353578 PANK4Q9NVE7 773 aa13.4□□□□□ -0.26
COL6A3-203ENST00000353578 DENND2AQ9ULE3 1009 aa13.4□□□□□ -0.26
COL6A3-203ENST00000353578 PSMD14O00487 310 aa13.4□□□□□ -0.26
COL6A3-203ENST00000353578 CFLARO15519 480 aa13.4□□□□□ -0.26
COL6A3-203ENST00000353578 NBNO60934 754 aa13.4□□□□□ -0.26
COL6A3-203ENST00000353578 B3GNT6Q6ZMB0 384 aa13.4□□□□□ -0.26
COL6A3-203ENST00000353578 ATP6V1HQ9UI12 483 aa13.4□□□□□ -0.26
COL6A3-203ENST00000353578 TRPM2O94759 1503 aa13.4□□□□□ -0.26
COL6A3-203ENST00000353578 KIAA0586Q9BVV6 1533 aa13.4□□□□□ -0.26
COL6A3-203ENST00000353578 HOXB6P17509 224 aaKnown RBP13.4□□□□□ -0.27
COL6A3-203ENST00000353578 ATXN3P54252 364 aaPredicted RBP13.4□□□□□ -0.27
COL6A3-203ENST00000353578 KIAA0825Q8IV33 1275 aa13.4□□□□□ -0.27
COL6A3-203ENST00000353578 NCLNQ969V3 563 aa13.4□□□□□ -0.27
COL6A3-203ENST00000353578 PCDHA5Q9Y5H7 936 aa13.4□□□□□ -0.27
COL6A3-203ENST00000353578 CALB2P22676 271 aa13.39□□□□□ -0.27
COL6A3-203ENST00000353578 ADARP55265 1226 aaKnown RBP13.39□□□□□ -0.27
COL6A3-203ENST00000353578 HDLBPQ00341 1268 aaKnown RBP13.39□□□□□ -0.27
COL6A3-203ENST00000353578 SNX17Q15036 470 aa13.39□□□□□ -0.27
COL6A3-203ENST00000353578 TOM1L2Q6ZVM7 507 aa13.39□□□□□ -0.27
COL6A3-203ENST00000353578 HACE1Q8IYU2 909 aa13.39□□□□□ -0.27
COL6A3-203ENST00000353578 THEMISQ8N1K5 641 aaPredicted RBP13.39□□□□□ -0.27
COL6A3-203ENST00000353578 TUBGCP4Q9UGJ1 667 aa13.39□□□□□ -0.27
COL6A3-203ENST00000353578 CASP2P42575 452 aa13.39□□□□□ -0.27
COL6A3-203ENST00000353578 SNAP25P60880 206 aa13.39□□□□□ -0.27
COL6A3-203ENST00000353578 GPBP1Q86WP2 473 aa13.39□□□□□ -0.27
COL6A3-203ENST00000353578 C8orf4Q9NR00 106 aa13.39□□□□□ -0.27
COL6A3-203ENST00000353578 CHPF2Q9P2E5 772 aa13.39□□□□□ -0.27
COL6A3-203ENST00000353578 PCDH11YQ9BZA8 1340 aa13.39□□□□□ -0.27
COL6A3-203ENST00000353578 VCPP55072 806 aaKnown RBP13.39□□□□□ -0.27
COL6A3-203ENST00000353578 BTNL9Q6UXG8 535 aa13.39□□□□□ -0.27
COL6A3-203ENST00000353578 RASGRP2Q7LDG7 609 aa13.39□□□□□ -0.27
COL6A3-203ENST00000353578 RAP1GAPP47736 663 aa13.39□□□□□ -0.27
COL6A3-203ENST00000353578 USH1GQ495M9 461 aa13.39□□□□□ -0.27
COL6A3-203ENST00000353578 ADNPQ9H2P0 1102 aa13.39□□□□□ -0.27
COL6A3-203ENST00000353578 CFAP69A5D8W1 941 aa13.39□□□□□ -0.27
COL6A3-203ENST00000353578 ZMYND10O75800 440 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms