RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 WDR81Q562E7 1941 aa10.2□□□□□ -0.78
ATG4A-202ENST00000345734 MFAP3LO75121 409 aa10.2□□□□□ -0.78
ATG4A-202ENST00000345734 BCRP11274 1271 aa10.2□□□□□ -0.78
ATG4A-202ENST00000345734 KCNJ6P48051 423 aa10.2□□□□□ -0.78
ATG4A-202ENST00000345734 CASP5P51878 434 aa10.2□□□□□ -0.78
ATG4A-202ENST00000345734 PLS1Q14651 629 aa10.2□□□□□ -0.78
ATG4A-202ENST00000345734 EPHA7Q15375 998 aa10.2□□□□□ -0.78
ATG4A-202ENST00000345734 SWI5Q1ZZU3 235 aa10.2□□□□□ -0.78
ATG4A-202ENST00000345734 MIIPQ5JXC2 388 aa10.2□□□□□ -0.78
ATG4A-202ENST00000345734 ARHGEF16Q5VV41 709 aa10.2□□□□□ -0.78
ATG4A-202ENST00000345734 RINT1Q6NUQ1 792 aa10.2□□□□□ -0.78
ATG4A-202ENST00000345734 LRRC55Q6ZSA7 311 aa10.2□□□□□ -0.78
ATG4A-202ENST00000345734 NIPA1Q7RTP0 329 aa10.2□□□□□ -0.78
ATG4A-202ENST00000345734 SFR1Q86XK3 245 aa10.2□□□□□ -0.78
ATG4A-202ENST00000345734 FAM114A1Q8IWE2 563 aa10.2□□□□□ -0.78
ATG4A-202ENST00000345734 RIT2Q99578 217 aa10.2□□□□□ -0.78
ATG4A-202ENST00000345734 PDCD2LQ9BRP1 358 aa10.2□□□□□ -0.78
ATG4A-202ENST00000345734 PNMA2Q9UL42 364 aa10.2□□□□□ -0.78
ATG4A-202ENST00000345734 PPP1R12BO60237 982 aaPredicted RBP10.19□□□□□ -0.78
ATG4A-202ENST00000345734 ERCC3P19447 782 aa10.19□□□□□ -0.78
ATG4A-202ENST00000345734 KLK7P49862 253 aa10.19□□□□□ -0.78
ATG4A-202ENST00000345734 OAZ1P54368 228 aa10.19□□□□□ -0.78
ATG4A-202ENST00000345734 LRRC63Q05C16 580 aa10.19□□□□□ -0.78
ATG4A-202ENST00000345734 ZNF211Q13398 564 aaPredicted RBP10.19□□□□□ -0.78
ATG4A-202ENST00000345734 MTMR1Q13613 665 aa10.19□□□□□ -0.78
ATG4A-202ENST00000345734 ZCWPW2Q504Y3 356 aa10.19□□□□□ -0.78
ATG4A-202ENST00000345734 TOGARAM2Q6ZUX3 1019 aa10.19□□□□□ -0.78
ATG4A-202ENST00000345734 SAMD3Q8N6K7 520 aa10.19□□□□□ -0.78
ATG4A-202ENST00000345734 CLMNQ96JQ2 1002 aa10.19□□□□□ -0.78
ATG4A-202ENST00000345734 PANX2Q96RD6 677 aa10.19□□□□□ -0.78
ATG4A-202ENST00000345734 LXNQ9BS40 222 aa10.19□□□□□ -0.78
ATG4A-202ENST00000345734 ELP3Q9H9T3 547 aa10.19□□□□□ -0.78
ATG4A-202ENST00000345734 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.19□□□□□ -0.78
ATG4A-202ENST00000345734 CSADQ9Y600 493 aa10.19□□□□□ -0.78
ATG4A-202ENST00000345734 LOXHD1Q8IVV2 1947 aa10.19□□□□□ -0.78
ATG4A-202ENST00000345734 ARHGAP6O43182 974 aa10.19□□□□□ -0.78
ATG4A-202ENST00000345734 STX10O60499 249 aa10.19□□□□□ -0.78
ATG4A-202ENST00000345734 ATP9AO75110 1047 aa10.19□□□□□ -0.78
ATG4A-202ENST00000345734 HOXA7P31268 230 aaPredicted RBP10.19□□□□□ -0.78
ATG4A-202ENST00000345734 MTF1Q14872 753 aa10.19□□□□□ -0.78
ATG4A-202ENST00000345734 PTPN14Q15678 1187 aa10.19□□□□□ -0.78
ATG4A-202ENST00000345734 OCLNQ16625 522 aa10.19□□□□□ -0.78
ATG4A-202ENST00000345734 C1orf186Q6ZWK4 172 aa10.19□□□□□ -0.78
ATG4A-202ENST00000345734 VASH1Q7L8A9 365 aaPredicted RBP10.19□□□□□ -0.78
ATG4A-202ENST00000345734 MIER3Q7Z3K6 550 aa10.19□□□□□ -0.78
ATG4A-202ENST00000345734 CDCA5Q96FF9 252 aa10.19□□□□□ -0.78
ATG4A-202ENST00000345734 TSG101Q99816 390 aa10.19□□□□□ -0.78
ATG4A-202ENST00000345734 NOC4LQ9BVI4 516 aaKnown RBP10.19□□□□□ -0.78
ATG4A-202ENST00000345734 TEX13BQ9BXU2 312 aa10.19□□□□□ -0.78
ATG4A-202ENST00000345734 KCTD10Q9H3F6 313 aa10.19□□□□□ -0.78
ATG4A-202ENST00000345734 HOXC10Q9NYD6 342 aa10.19□□□□□ -0.78
ATG4A-202ENST00000345734 SOWAHDA6NJG2 315 aa10.18□□□□□ -0.78
ATG4A-202ENST00000345734 RASSF10A6NK89 507 aa10.18□□□□□ -0.78
ATG4A-202ENST00000345734 TRAF5O00463 557 aa10.18□□□□□ -0.78
ATG4A-202ENST00000345734 ATP2A1O14983 1001 aa10.18□□□□□ -0.78
ATG4A-202ENST00000345734 MYBP10242 640 aa10.18□□□□□ -0.78
ATG4A-202ENST00000345734 EPHX2P34913 555 aa10.18□□□□□ -0.78
ATG4A-202ENST00000345734 HOXD13P35453 343 aa10.18□□□□□ -0.78
ATG4A-202ENST00000345734 DNM2P50570 870 aa10.18□□□□□ -0.78
ATG4A-202ENST00000345734 USP4Q13107 963 aa10.18□□□□□ -0.78
ATG4A-202ENST00000345734 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.18□□□□□ -0.78
ATG4A-202ENST00000345734 NACC1Q96RE7 527 aa10.18□□□□□ -0.78
ATG4A-202ENST00000345734 A1CFQ9NQ94 594 aaKnown RBP10.18□□□□□ -0.78
ATG4A-202ENST00000345734 A0A1W2PQC6 194 aa10.18□□□□□ -0.78
ATG4A-202ENST00000345734 TBCAO75347 108 aaKnown RBP10.18□□□□□ -0.78
ATG4A-202ENST00000345734 PRPF6O94906 941 aaKnown RBP10.18□□□□□ -0.78
ATG4A-202ENST00000345734 IREB2P48200 963 aaKnown RBP10.18□□□□□ -0.78
ATG4A-202ENST00000345734 TBC1D8BQ0IIM8 1120 aa10.18□□□□□ -0.78
ATG4A-202ENST00000345734 MTMR3Q13615 1198 aa10.18□□□□□ -0.78
ATG4A-202ENST00000345734 SYCP1Q15431 976 aa10.18□□□□□ -0.78
ATG4A-202ENST00000345734 INTS6LQ5JSJ4 861 aaKnown RBP10.18□□□□□ -0.78
ATG4A-202ENST00000345734 GADL1Q6ZQY3 521 aa10.18□□□□□ -0.78
ATG4A-202ENST00000345734 USP50Q70EL3 339 aaPredicted RBP10.18□□□□□ -0.78
ATG4A-202ENST00000345734 EPM2AIP1Q7L775 607 aaPredicted RBP10.18□□□□□ -0.78
ATG4A-202ENST00000345734 VSIG10LQ86VR7 867 aa10.18□□□□□ -0.78
ATG4A-202ENST00000345734 CNGA4Q8IV77 575 aa10.18□□□□□ -0.78
ATG4A-202ENST00000345734 DESI2Q9BSY9 194 aa10.18□□□□□ -0.78
ATG4A-202ENST00000345734 ACAD9Q9H845 621 aa10.18□□□□□ -0.78
ATG4A-202ENST00000345734 CYP39A1Q9NYL5 469 aa10.18□□□□□ -0.78
ATG4A-202ENST00000345734 SAMM50Q9Y512 469 aa10.18□□□□□ -0.78
ATG4A-202ENST00000345734 LOC285556D6RIA3 1793 aa10.18□□□□□ -0.78
ATG4A-202ENST00000345734 UQCRHLA0A096LP55 91 aa10.17□□□□□ -0.78
ATG4A-202ENST00000345734 TTC26A0AVF1 554 aa10.17□□□□□ -0.78
ATG4A-202ENST00000345734 ERVH48-1M5A8F1 160 aa10.17□□□□□ -0.78
ATG4A-202ENST00000345734 FGFR1OPO95684 399 aaKnown RBP10.17□□□□□ -0.78
ATG4A-202ENST00000345734 UQCRHP07919 91 aa10.17□□□□□ -0.78
ATG4A-202ENST00000345734 NR3C2P08235 984 aa10.17□□□□□ -0.78
ATG4A-202ENST00000345734 TPM1P09493 284 aa10.17□□□□□ -0.78
ATG4A-202ENST00000345734 MUTP22033 750 aa10.17□□□□□ -0.78
ATG4A-202ENST00000345734 CCND2P30279 289 aa10.17□□□□□ -0.78
ATG4A-202ENST00000345734 KRT9P35527 623 aa10.17□□□□□ -0.78
ATG4A-202ENST00000345734 VWA3BQ502W6 1294 aa10.17□□□□□ -0.78
ATG4A-202ENST00000345734 FOXR2Q6PJQ5 311 aa10.17□□□□□ -0.78
ATG4A-202ENST00000345734 RAD9BQ6WBX8 426 aa10.17□□□□□ -0.78
ATG4A-202ENST00000345734 REXO1L1PQ8IX06 675 aa10.17□□□□□ -0.78
ATG4A-202ENST00000345734 MRPL44Q9H9J2 332 aaKnown RBP10.17□□□□□ -0.78
ATG4A-202ENST00000345734 TMPRSS4Q9NRS4 437 aa10.17□□□□□ -0.78
ATG4A-202ENST00000345734 ABHD10Q9NUJ1 306 aa10.17□□□□□ -0.78
ATG4A-202ENST00000345734 BTBD7Q9P203 1132 aa10.17□□□□□ -0.78
ATG4A-202ENST00000345734 PPP2R2CQ9Y2T4 447 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms