RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 TMEM206Q9H813 350 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 ATP6V0A4Q9HBG4 840 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 LOC102724159A0A0B4J2E5 919 aa14.69□□□□□ -0.06
HMGB1-202ENST00000339872 A0A1W2PQJ5 194 aa14.69□□□□□ -0.06
HMGB1-202ENST00000339872 EPHB6O15197 1021 aa14.69□□□□□ -0.06
HMGB1-202ENST00000339872 XRCC5P13010 732 aaKnown RBP14.69□□□□□ -0.06
HMGB1-202ENST00000339872 TCF7P36402 384 aaPredicted RBP14.69□□□□□ -0.06
HMGB1-202ENST00000339872 KCNH2Q12809 1159 aa14.69□□□□□ -0.06
HMGB1-202ENST00000339872 PWP2Q15269 919 aaKnown RBP14.69□□□□□ -0.06
HMGB1-202ENST00000339872 FAM160B1Q5W0V3 765 aa14.69□□□□□ -0.06
HMGB1-202ENST00000339872 CYP26C1Q6V0L0 522 aa14.69□□□□□ -0.06
HMGB1-202ENST00000339872 ARMCX2Q7L311 632 aa14.69□□□□□ -0.06
HMGB1-202ENST00000339872 TMTC1Q8IUR5 882 aa14.69□□□□□ -0.06
HMGB1-202ENST00000339872 IQCDQ96DY2 449 aa14.69□□□□□ -0.06
HMGB1-202ENST00000339872 PCYT2Q99447 389 aa14.69□□□□□ -0.06
HMGB1-202ENST00000339872 METTL14Q9HCE5 456 aaKnown RBP14.69□□□□□ -0.06
HMGB1-202ENST00000339872 XPNPEP1Q9NQW7 623 aa14.69□□□□□ -0.06
HMGB1-202ENST00000339872 PSMC2P35998 433 aaKnown RBP14.69□□□□□ -0.06
HMGB1-202ENST00000339872 NPTX2P47972 431 aa14.69□□□□□ -0.06
HMGB1-202ENST00000339872 SMTNP53814 917 aa14.69□□□□□ -0.06
HMGB1-202ENST00000339872 POLGP54098 1239 aaPredicted RBP14.69□□□□□ -0.06
HMGB1-202ENST00000339872 ZBED6P86452 979 aa14.69□□□□□ -0.06
HMGB1-202ENST00000339872 GTF2BQ00403 316 aa14.69□□□□□ -0.06
HMGB1-202ENST00000339872 KCNMA1Q12791 1236 aa14.69□□□□□ -0.06
HMGB1-202ENST00000339872 ZNF792Q3KQV3 632 aa14.69□□□□□ -0.06
HMGB1-202ENST00000339872 TCERG1LQ5VWI1 586 aa14.69□□□□□ -0.06
HMGB1-202ENST00000339872 FAM186BQ8IYM0 893 aa14.69□□□□□ -0.06
HMGB1-202ENST00000339872 SLC17A8Q8NDX2 589 aa14.69□□□□□ -0.06
HMGB1-202ENST00000339872 ZNF397Q8NF99 534 aaPredicted RBP14.69□□□□□ -0.06
HMGB1-202ENST00000339872 NEK11Q8NG66 645 aa14.69□□□□□ -0.06
HMGB1-202ENST00000339872 SEPT1Q8WYJ6 367 aa14.69□□□□□ -0.06
HMGB1-202ENST00000339872 BSNDQ8WZ55 320 aa14.69□□□□□ -0.06
HMGB1-202ENST00000339872 KIFC3Q9BVG8 833 aa14.69□□□□□ -0.06
HMGB1-202ENST00000339872 ST6GALNAC4Q9H4F1 302 aa14.69□□□□□ -0.06
HMGB1-202ENST00000339872 NOP56O00567 594 aaKnown RBP14.68□□□□□ -0.06
HMGB1-202ENST00000339872 STAT5BP51692 787 aa14.68□□□□□ -0.06
HMGB1-202ENST00000339872 ZNF157P51786 506 aaPredicted RBP14.68□□□□□ -0.06
HMGB1-202ENST00000339872 PPP2R3AQ06190 1150 aa14.68□□□□□ -0.06
HMGB1-202ENST00000339872 EMC2Q15006 297 aa14.68□□□□□ -0.06
HMGB1-202ENST00000339872 CELF3Q5SZQ8 465 aaKnown RBP14.68□□□□□ -0.06
HMGB1-202ENST00000339872 RASAL3Q86YV0 1011 aa14.68□□□□□ -0.06
HMGB1-202ENST00000339872 REXO1L1PQ8IX06 675 aa14.68□□□□□ -0.06
HMGB1-202ENST00000339872 KMT5AQ9NQR1 393 aa14.68□□□□□ -0.06
HMGB1-202ENST00000339872 PDLIM7Q9NR12 457 aa14.68□□□□□ -0.06
HMGB1-202ENST00000339872 FRMD4BQ9Y2L6 1034 aa14.68□□□□□ -0.06
HMGB1-202ENST00000339872 DCAF8L1A6NGE4 600 aa14.67□□□□□ -0.06
HMGB1-202ENST00000339872 TISP43B9A030 160 aa14.67□□□□□ -0.06
HMGB1-202ENST00000339872 STRNO43815 780 aa14.67□□□□□ -0.06
HMGB1-202ENST00000339872 AFPP02771 609 aaKnown RBP14.67□□□□□ -0.06
HMGB1-202ENST00000339872 CCDC175P0C221 793 aa14.67□□□□□ -0.06
HMGB1-202ENST00000339872 TXNP10599 105 aaKnown RBP14.67□□□□□ -0.06
HMGB1-202ENST00000339872 FAM110CQ1W6H9 321 aa14.67□□□□□ -0.06
HMGB1-202ENST00000339872 HSDL1Q3SXM5 330 aa14.67□□□□□ -0.06
HMGB1-202ENST00000339872 CCDC62Q6P9F0 684 aa14.67□□□□□ -0.06
HMGB1-202ENST00000339872 GPR142Q7Z601 462 aa14.67□□□□□ -0.06
HMGB1-202ENST00000339872 DHX37Q8IY37 1157 aaKnown RBP14.67□□□□□ -0.06
HMGB1-202ENST00000339872 ABRAQ8N0Z2 381 aa14.67□□□□□ -0.06
HMGB1-202ENST00000339872 TMEM161BQ8NDZ6 487 aa14.67□□□□□ -0.06
HMGB1-202ENST00000339872 CHP1Q99653 195 aa14.67□□□□□ -0.06
HMGB1-202ENST00000339872 CRACR2AQ9BSW2 395 aa14.67□□□□□ -0.06
HMGB1-202ENST00000339872 POLR3FQ9H1D9 316 aaPredicted RBP14.67□□□□□ -0.06
HMGB1-202ENST00000339872 C17orf75Q9HAS0 396 aa14.67□□□□□ -0.06
HMGB1-202ENST00000339872 PDGFCQ9NRA1 345 aa14.67□□□□□ -0.06
HMGB1-202ENST00000339872 TTLL4Q14679 1199 aa14.67□□□□□ -0.06
HMGB1-202ENST00000339872 AFAP1L1Q8TED9 768 aa14.67□□□□□ -0.06
HMGB1-202ENST00000339872 SCFD2Q8WU76 684 aa14.67□□□□□ -0.06
HMGB1-202ENST00000339872 ZNF592Q92610 1267 aa14.67□□□□□ -0.06
HMGB1-202ENST00000339872 COPS5Q92905 334 aa14.67□□□□□ -0.06
HMGB1-202ENST00000339872 SPATA33Q96N06 139 aa14.67□□□□□ -0.06
HMGB1-202ENST00000339872 GPR20Q99678 358 aa14.67□□□□□ -0.06
HMGB1-202ENST00000339872 MKNK1Q9BUB5 465 aa14.67□□□□□ -0.06
HMGB1-202ENST00000339872 LSM14BQ9BX40 385 aaKnown RBP14.67□□□□□ -0.06
HMGB1-202ENST00000339872 AZI2Q9H6S1 392 aa14.67□□□□□ -0.06
HMGB1-202ENST00000339872 DMAC2Q9NW81 257 aa14.67□□□□□ -0.06
HMGB1-202ENST00000339872 ZNHIT6Q9NWK9 470 aaKnown RBP14.67□□□□□ -0.06
HMGB1-202ENST00000339872 DENND3A2RUS2 1198 aa14.66□□□□□ -0.06
HMGB1-202ENST00000339872 EXOC3O60645 756 aa14.66□□□□□ -0.06
HMGB1-202ENST00000339872 TMEM63BQ5T3F8 832 aa14.66□□□□□ -0.06
HMGB1-202ENST00000339872 WDR59Q6PJI9 974 aa14.66□□□□□ -0.06
HMGB1-202ENST00000339872 GLG1Q92896 1179 aa14.66□□□□□ -0.06
HMGB1-202ENST00000339872 SLC35C1Q96A29 364 aa14.66□□□□□ -0.06
HMGB1-202ENST00000339872 NIFKQ9BYG3 293 aaKnown RBP14.66□□□□□ -0.06
HMGB1-202ENST00000339872 TBX20Q9UMR3 447 aa14.66□□□□□ -0.06
HMGB1-202ENST00000339872 MEA1Q16626 185 aa14.66□□□□□ -0.06
HMGB1-202ENST00000339872 CACNA2D4Q7Z3S7 1137 aa14.66□□□□□ -0.06
HMGB1-202ENST00000339872 DPP9Q86TI2 863 aa14.66□□□□□ -0.06
HMGB1-202ENST00000339872 TRIM50Q86XT4 487 aa14.66□□□□□ -0.06
HMGB1-202ENST00000339872 SLC9A9Q8IVB4 645 aa14.66□□□□□ -0.06
HMGB1-202ENST00000339872 SPIRE2Q8WWL2 714 aa14.66□□□□□ -0.06
HMGB1-202ENST00000339872 SLC7A3Q8WY07 619 aa14.66□□□□□ -0.06
HMGB1-202ENST00000339872 HVCN1Q96D96 273 aa14.66□□□□□ -0.06
HMGB1-202ENST00000339872 BORCS6Q96GS4 357 aa14.66□□□□□ -0.06
HMGB1-202ENST00000339872 IFT74Q96LB3 600 aa14.66□□□□□ -0.06
HMGB1-202ENST00000339872 PCIF1Q9H4Z3 704 aa14.66□□□□□ -0.06
HMGB1-202ENST00000339872 NRBP2Q9NSY0 501 aa14.66□□□□□ -0.06
HMGB1-202ENST00000339872 ADGRG1Q9Y653 693 aa14.66□□□□□ -0.06
HMGB1-202ENST00000339872 ADGRA3Q8IWK6 1321 aa14.65□□□□□ -0.06
HMGB1-202ENST00000339872 KIF2AO00139 706 aaPredicted RBP14.65□□□□□ -0.06
HMGB1-202ENST00000339872 MARK3P27448 753 aa14.65□□□□□ -0.06
HMGB1-202ENST00000339872 RTP1P59025 263 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms