RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 JRKLQ9Y4A0 524 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 TRAPPC3O43617 180 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 LYPLA2O95372 231 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 SRGAP2CP0DJJ0 459 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 CACNB1Q02641 598 aaPredicted RBP7.43□□□□□ -1.22
SF3B1-201ENST00000335508 GRIK5Q16478 980 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 SOCS4Q8WXH5 440 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 MAK16Q9BXY0 300 aaKnown RBP7.43□□□□□ -1.22
SF3B1-201ENST00000335508 GLIS2Q9BZE0 524 aaPredicted RBP7.43□□□□□ -1.22
SF3B1-201ENST00000335508 MSCO60682 206 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 STK10O94804 968 aaKnown RBP7.43□□□□□ -1.22
SF3B1-201ENST00000335508 IVLP07476 585 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 DPYDQ12882 1025 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 RIOX2Q8IUF8 465 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 RNF149Q8NC42 400 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 ERGIC2Q96RQ1 377 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 AGO2Q9UKV8 859 aaKnown RBP7.43□□□□□ -1.22
SF3B1-201ENST00000335508 ANKRD26Q9UPS8 1709 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 WTIPA6NIX2 430 aaPredicted RBP7.43□□□□□ -1.22
SF3B1-201ENST00000335508 NDUFA10O95299 355 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 RASSF7Q02833 373 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 PAK2Q13177 524 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 Q4G0T1 1027 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 DPH6Q7L8W6 267 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 METTL23Q86XA0 190 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 C7orf31Q8N865 590 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 ARRDC4Q8NCT1 418 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 ATP8B4Q8TF62 1192 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 MMS19Q96T76 1030 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 SUPT20HL2P0C7V6 817 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 CYP2C9P11712 490 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 GARTP22102 1010 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 FCGRTP55899 365 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 ACTR2P61160 394 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 PRKCEQ02156 737 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 CCDC50Q8IVM0 306 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 FAM149B1Q96BN6 582 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 TAAR1Q96RJ0 339 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 P2RX7Q99572 595 aaKnown RBP7.42□□□□□ -1.22
SF3B1-201ENST00000335508 RAB17Q9H0T7 212 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 TAF1DQ9H5J8 278 aaPredicted RBP7.42□□□□□ -1.22
SF3B1-201ENST00000335508 STRIP2Q9ULQ0 834 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 MYMKA6NI61 221 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 CLIC2O15247 247 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 RRP9O43818 475 aaKnown RBP7.42□□□□□ -1.22
SF3B1-201ENST00000335508 SERPING1P05155 500 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 PLS3P13797 630 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 KIAA1841Q6NSI8 718 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 RSRC2Q7L4I2 434 aaKnown RBP7.42□□□□□ -1.22
SF3B1-201ENST00000335508 CYFIP1Q7L576 1253 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 TAX1BP1Q86VP1 789 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 BEST2Q8NFU1 509 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 ERICH4A6NGS2 130 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 CCDC188H7C350 402 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 SLC16A4O15374 487 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 RARBP10826 455 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 CYP2B6P20813 491 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 IFT20Q8IY31 132 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 UPF1Q92900 1129 aaKnown RBP eCLIP7.42□□□□□ -1.227e-6■■■■□ 24.4
SF3B1-201ENST00000335508 LRRC4Q9HBW1 653 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 BCCIPQ9P287 314 aaKnown RBP eCLIP7.42□□□□□ -1.22
SF3B1-201ENST00000335508 PLAGL2Q9UPG8 496 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 LMO7Q8WWI1 1683 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 KNTC1P50748 2209 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 A0A1B0GTH6 734 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 A0A1W2PRG0 241 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 ZBTB48P10074 688 aaPredicted RBP7.42□□□□□ -1.22
SF3B1-201ENST00000335508 FAM110CQ1W6H9 321 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 NBPF11Q86T75 865 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 BBOF1Q8ND07 529 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 ASCC2Q9H1I8 757 aaPredicted RBP7.42□□□□□ -1.22
SF3B1-201ENST00000335508 FAM204AQ9H8W3 233 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 PARP2Q9UGN5 583 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 DBR1Q9UK59 544 aaKnown RBP7.42□□□□□ -1.22
SF3B1-201ENST00000335508 CAPN9O14815 690 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 HIP1RO75146 1068 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 MAPTP10636 758 aaKnown RBP7.42□□□□□ -1.22
SF3B1-201ENST00000335508 LRMPQ12912 555 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 ZPBP2Q6X784 338 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 RUFY4Q6ZNE9 571 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 DYDC1Q8WWB3 177 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 TXNDC16Q9P2K2 825 aa7.42□□□□□ -1.22
SF3B1-201ENST00000335508 NFIBO00712 420 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 IRF6O14896 467 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 HUS1O60921 280 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 NPEPPSP55786 919 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 SNAP25P60880 206 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 MKRN3Q13064 507 aaKnown RBP7.41□□□□□ -1.22
SF3B1-201ENST00000335508 TFDP2Q14188 446 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 DGKDQ16760 1214 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 CATSPERGQ6ZRH7 1159 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 RNF180Q86T96 592 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 RANBP17Q9H2T7 1088 aaKnown RBP7.41□□□□□ -1.22
SF3B1-201ENST00000335508 WDR35Q9P2L0 1181 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 GTPBP10A4D1E9 387 aaKnown RBP7.41□□□□□ -1.22
SF3B1-201ENST00000335508 SLC15A5A6NIM6 579 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 H3BRB1 525 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 RARRES1P49788 294 aa7.41□□□□□ -1.22
SF3B1-201ENST00000335508 TOB1P50616 345 aaPredicted RBP7.41□□□□□ -1.22
SF3B1-201ENST00000335508 TAF3Q5VWG9 929 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms