RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 TBC1D7Q9P0N9 293 aa16.46■□□□□ 0.23
CCDC88C-202ENST00000334448 SRRDQ9UH36 339 aa16.46■□□□□ 0.23
CCDC88C-202ENST00000334448 ZNF215Q9UL58 517 aaPredicted RBP16.46■□□□□ 0.23
CCDC88C-202ENST00000334448 GABRQQ9UN88 632 aa16.46■□□□□ 0.23
CCDC88C-202ENST00000334448 ZMYM2Q9UBW7 1377 aa16.46■□□□□ 0.23
CCDC88C-202ENST00000334448 SFI1A8K8P3 1242 aa16.45■□□□□ 0.22
CCDC88C-202ENST00000334448 H0YCG3 227 aa16.45■□□□□ 0.22
CCDC88C-202ENST00000334448 TRPA1O75762 1119 aa16.45■□□□□ 0.22
CCDC88C-202ENST00000334448 GCNT3O95395 438 aa16.45■□□□□ 0.22
CCDC88C-202ENST00000334448 F2P00734 622 aa16.45■□□□□ 0.22
CCDC88C-202ENST00000334448 NMT1P30419 496 aaKnown RBP16.45■□□□□ 0.22
CCDC88C-202ENST00000334448 POLGP54098 1239 aaPredicted RBP16.45■□□□□ 0.22
CCDC88C-202ENST00000334448 MARSP56192 900 aaKnown RBP16.45■□□□□ 0.22
CCDC88C-202ENST00000334448 DMP1Q13316 513 aaPredicted RBP16.45■□□□□ 0.22
CCDC88C-202ENST00000334448 MYBPC2Q14324 1141 aa16.45■□□□□ 0.22
CCDC88C-202ENST00000334448 TCP11X2Q5H9J9 407 aa16.45■□□□□ 0.22
CCDC88C-202ENST00000334448 ZNF484Q5JVG2 852 aa16.45■□□□□ 0.22
CCDC88C-202ENST00000334448 FAM102BQ5T8I3 360 aa16.45■□□□□ 0.22
CCDC88C-202ENST00000334448 GPRC5CQ9NQ84 441 aa16.45■□□□□ 0.22
CCDC88C-202ENST00000334448 CGNQ9P2M7 1197 aaKnown RBP16.45■□□□□ 0.22
CCDC88C-202ENST00000334448 DUSP11O75319 330 aaKnown RBP16.44■□□□□ 0.22
CCDC88C-202ENST00000334448 TPM3P06753 285 aa16.44■□□□□ 0.22
CCDC88C-202ENST00000334448 PTGS1P23219 599 aa16.44■□□□□ 0.22
CCDC88C-202ENST00000334448 NPTX2P47972 431 aa16.44■□□□□ 0.22
CCDC88C-202ENST00000334448 SMTNP53814 917 aa16.44■□□□□ 0.22
CCDC88C-202ENST00000334448 PRMT2P55345 433 aa16.44■□□□□ 0.22
CCDC88C-202ENST00000334448 PPP2R5AQ15172 486 aa16.44■□□□□ 0.22
CCDC88C-202ENST00000334448 PRAMEF19Q5SWL8 479 aa16.44■□□□□ 0.22
CCDC88C-202ENST00000334448 TLK2Q86UE8 772 aa16.44■□□□□ 0.22
CCDC88C-202ENST00000334448 C12orf56Q8IXR9 622 aa16.44■□□□□ 0.22
CCDC88C-202ENST00000334448 TMEM161BQ8NDZ6 487 aa16.44■□□□□ 0.22
CCDC88C-202ENST00000334448 TRPV1Q8NER1 839 aa16.44■□□□□ 0.22
CCDC88C-202ENST00000334448 ANKRD20A12PQ8NF67 263 aa16.44■□□□□ 0.22
CCDC88C-202ENST00000334448 ERO1AQ96HE7 468 aa16.44■□□□□ 0.22
CCDC88C-202ENST00000334448 SH2D3AQ9BRG2 576 aa16.44■□□□□ 0.22
CCDC88C-202ENST00000334448 SRRTQ9BXP5 876 aaKnown RBP16.44■□□□□ 0.22
CCDC88C-202ENST00000334448 XPO4Q9C0E2 1151 aaKnown RBP16.44■□□□□ 0.22
CCDC88C-202ENST00000334448 POLR3FQ9H1D9 316 aaPredicted RBP16.44■□□□□ 0.22
CCDC88C-202ENST00000334448 UPF3AQ9H1J1 476 aaKnown RBP16.44■□□□□ 0.22
CCDC88C-202ENST00000334448 TMEM206Q9H813 350 aa16.44■□□□□ 0.22
CCDC88C-202ENST00000334448 IFNKQ9P0W0 207 aa16.44■□□□□ 0.22
CCDC88C-202ENST00000334448 ARHGAP28Q9P2N2 729 aa16.44■□□□□ 0.22
CCDC88C-202ENST00000334448 ZSWIM8A7E2V4 1837 aa16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 KCNJ18B7U540 433 aa16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 K7ENM7 598 aa16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 TGFB1I1O43294 461 aa16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 CALUO43852 315 aaPredicted RBP16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 PRPF6O94906 941 aaKnown RBP16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 GNA14O95837 355 aa16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 SERPINC1P01008 464 aa16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 CDK11BP21127 795 aaKnown RBP16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 NAMPTP43490 491 aa16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 CPT1AP50416 773 aa16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 UBASH3AP57075 661 aa16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 PLCB2Q00722 1185 aa16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 TBC1D8BQ0IIM8 1120 aa16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 KCNJ12Q14500 433 aa16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 ARHGEF6Q15052 776 aa16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 KRT31Q15323 416 aa16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 HS1BP3Q53T59 392 aa16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 MAP3K21Q5TCX8 1036 aa16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 IER5Q5VY09 327 aa16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 HAUS6Q7Z4H7 955 aa16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 FILIP1Q7Z7B0 1213 aa16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 SLC9A9Q8IVB4 645 aa16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 MAP4K3Q8IVH8 894 aa16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 LINC01465Q8N7H1 131 aa16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 PXYLP1Q8TE99 480 aa16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 TCP11Q8WWU5 503 aa16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 BSNDQ8WZ55 320 aa16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 INTS13Q9NVM9 706 aa16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 MYH9P35579 1960 aaKnown RBP16.43■□□□□ 0.22
CCDC88C-202ENST00000334448 H3BRB1 525 aa16.42■□□□□ 0.22
CCDC88C-202ENST00000334448 SLC16A3O15427 465 aaKnown RBP16.42■□□□□ 0.22
CCDC88C-202ENST00000334448 MAGEB2O15479 319 aa16.42■□□□□ 0.22
CCDC88C-202ENST00000334448 SEPT4O43236 478 aa16.42■□□□□ 0.22
CCDC88C-202ENST00000334448 DYNC1LI2O43237 492 aaPredicted RBP16.42■□□□□ 0.22
CCDC88C-202ENST00000334448 C22orf31O95567 290 aa16.42■□□□□ 0.22
CCDC88C-202ENST00000334448 PEX3P56589 373 aa16.42■□□□□ 0.22
CCDC88C-202ENST00000334448 GJA9P57773 515 aa16.42■□□□□ 0.22
CCDC88C-202ENST00000334448 NR1I3Q14994 352 aa16.42■□□□□ 0.22
CCDC88C-202ENST00000334448 BRDTQ58F21 947 aaPredicted RBP16.42■□□□□ 0.22
CCDC88C-202ENST00000334448 NELFCDQ8IXH7 590 aa16.42■□□□□ 0.22
CCDC88C-202ENST00000334448 CD99L2Q8TCZ2 262 aa16.42■□□□□ 0.22
CCDC88C-202ENST00000334448 IFT74Q96LB3 600 aa16.42■□□□□ 0.22
CCDC88C-202ENST00000334448 CNOT6LQ96LI5 555 aaKnown RBP16.42■□□□□ 0.22
CCDC88C-202ENST00000334448 ACCSQ96QU6 501 aa16.42■□□□□ 0.22
CCDC88C-202ENST00000334448 GBP3Q9H0R5 595 aa16.42■□□□□ 0.22
CCDC88C-202ENST00000334448 TUT1Q9H6E5 874 aaKnown RBP16.42■□□□□ 0.22
CCDC88C-202ENST00000334448 POLD4Q9HCU8 107 aa16.42■□□□□ 0.22
CCDC88C-202ENST00000334448 MAGEC2Q9UBF1 373 aaPredicted RBP16.42■□□□□ 0.22
CCDC88C-202ENST00000334448 TRPC6Q9Y210 931 aa16.42■□□□□ 0.22
CCDC88C-202ENST00000334448 PHLPP2Q6ZVD8 1323 aa16.42■□□□□ 0.22
CCDC88C-202ENST00000334448 HAS3O00219 553 aa16.41■□□□□ 0.22
CCDC88C-202ENST00000334448 KPNA6O60684 536 aa16.41■□□□□ 0.22
CCDC88C-202ENST00000334448 FKTNO75072 461 aa16.41■□□□□ 0.22
CCDC88C-202ENST00000334448 HMGCRP04035 888 aa16.41■□□□□ 0.22
CCDC88C-202ENST00000334448 GLRA2P23416 452 aa16.41■□□□□ 0.22
CCDC88C-202ENST00000334448 RPL13P26373 211 aaKnown RBP16.41■□□□□ 0.22
CCDC88C-202ENST00000334448 MARK3P27448 753 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms