RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 SYT15Q9BQS2 421 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 DDX23Q9BUQ8 820 aaKnown RBP14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 ETNK1Q9HBU6 452 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 RIC8AQ9NPQ8 531 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 DNAJC17Q9NVM6 304 aaKnown RBP14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 SUCLA2Q9P2R7 463 aaPredicted RBP14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 PLCH1Q4KWH8 1693 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 KLRF2D3W0D1 207 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 EDIL3O43854 480 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 GFPT2O94808 682 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 IGHMBP2P38935 993 aaKnown RBP14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 ATP11AP98196 1134 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 DCAF17Q5H9S7 520 aaPredicted RBP14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 KIAA1755Q5JYT7 1200 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 SLFN11Q7Z7L1 901 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 SLC35G2Q8TBE7 412 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 UBA5Q9GZZ9 404 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 AMFRQ9UKV5 643 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 PTPN22Q9Y2R2 807 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 TMEM120BA0PK00 339 aa14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 E9PMD0 336 aa14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 RASGRF2O14827 1237 aa14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 GM2AP17900 193 aa14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 PRDX5P30044 214 aa14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 RWDD2BP57060 319 aa14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 PTENP60484 403 aa14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 GRM4Q14833 912 aa14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 SLC30A9Q6PML9 568 aa14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 ALG3Q92685 438 aa14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 BCAS3Q9H6U6 928 aa14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 BSDC1Q9NW68 430 aaPredicted RBP14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 GRHL1Q9NZI5 618 aa14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 DDX3YO15523 660 aaKnown RBP14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 CYP19A1P11511 503 aaPredicted RBP14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 CASP5P51878 434 aa14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 LACTBP83111 547 aaPredicted RBP14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 ITPK1Q13572 414 aa14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 IFI16Q16666 785 aaKnown RBP14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 TCERG1LQ5VWI1 586 aa14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 ASRGL1Q7L266 308 aa14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 ZDHHC14Q8IZN3 488 aa14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 DAGLBQ8NCG7 672 aa14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 SCFD1Q8WVM8 642 aa14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 POP1Q99575 1024 aaKnown RBP14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 NSRP1Q9H0G5 558 aaKnown RBP14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 PAPOLBQ9NRJ5 636 aaKnown RBP14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 HOMER3Q9NSC5 361 aa14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 HDAC9Q9UKV0 1011 aa14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 UBR2Q8IWV8 1755 aa14.54□□□□□ -0.08
CCDC88C-201ENST00000331194 SUN1O94901 812 aa14.53□□□□□ -0.08
CCDC88C-201ENST00000331194 ACSL3O95573 720 aa14.53□□□□□ -0.08
CCDC88C-201ENST00000331194 PON1P27169 355 aa14.53□□□□□ -0.08
CCDC88C-201ENST00000331194 PCK1P35558 622 aa14.53□□□□□ -0.08
CCDC88C-201ENST00000331194 HERC4Q5GLZ8 1057 aaPredicted RBP14.53□□□□□ -0.08
CCDC88C-201ENST00000331194 C6orf118Q5T5N4 469 aa14.53□□□□□ -0.08
CCDC88C-201ENST00000331194 MEX3CQ5U5Q3 659 aaKnown RBP14.53□□□□□ -0.08
CCDC88C-201ENST00000331194 CGB2Q6NT52 195 aa14.53□□□□□ -0.08
CCDC88C-201ENST00000331194 GLYCTKQ8IVS8 523 aa14.53□□□□□ -0.08
CCDC88C-201ENST00000331194 MTMR9Q96QG7 549 aa14.53□□□□□ -0.08
CCDC88C-201ENST00000331194 TSC22D3Q99576 134 aa14.53□□□□□ -0.08
CCDC88C-201ENST00000331194 BTNL10A8MVZ5 291 aa14.53□□□□□ -0.08
CCDC88C-201ENST00000331194 AGTP01019 485 aa14.53□□□□□ -0.08
CCDC88C-201ENST00000331194 KCNJ1P48048 391 aa14.53□□□□□ -0.08
CCDC88C-201ENST00000331194 MARCKSL1P49006 195 aa14.53□□□□□ -0.08
CCDC88C-201ENST00000331194 PAPOLAP51003 745 aaKnown RBP14.53□□□□□ -0.08
CCDC88C-201ENST00000331194 RAD23BP54727 409 aa14.53□□□□□ -0.08
CCDC88C-201ENST00000331194 KRT25Q7Z3Z0 450 aa14.53□□□□□ -0.08
CCDC88C-201ENST00000331194 TBC1D16Q8TBP0 767 aa14.53□□□□□ -0.08
CCDC88C-201ENST00000331194 NSUN4Q96CB9 384 aaKnown RBP14.53□□□□□ -0.08
CCDC88C-201ENST00000331194 IKZF4Q9H2S9 585 aa14.53□□□□□ -0.08
CCDC88C-201ENST00000331194 COL4A1P02462 1669 aa14.53□□□□□ -0.08
CCDC88C-201ENST00000331194 SLIT2O94813 1529 aa14.53□□□□□ -0.08
CCDC88C-201ENST00000331194 NR2F2P24468 414 aa14.52□□□□□ -0.08
CCDC88C-201ENST00000331194 MXRA7P84157 204 aa14.52□□□□□ -0.08
CCDC88C-201ENST00000331194 SPTY2D1Q68D10 685 aaPredicted RBP14.52□□□□□ -0.08
CCDC88C-201ENST00000331194 TTC27Q6P3X3 843 aa14.52□□□□□ -0.08
CCDC88C-201ENST00000331194 FAM47EQ6ZV65 393 aa14.52□□□□□ -0.08
CCDC88C-201ENST00000331194 SPATA21Q7Z572 469 aa14.52□□□□□ -0.08
CCDC88C-201ENST00000331194 LONP2Q86WA8 852 aa14.52□□□□□ -0.08
CCDC88C-201ENST00000331194 PROM2Q8N271 834 aa14.52□□□□□ -0.08
CCDC88C-201ENST00000331194 CNBD1Q8NA66 436 aa14.52□□□□□ -0.08
CCDC88C-201ENST00000331194 LNX1Q8TBB1 728 aaPredicted RBP14.52□□□□□ -0.08
CCDC88C-201ENST00000331194 COA7Q96BR5 231 aa14.52□□□□□ -0.08
CCDC88C-201ENST00000331194 ARHGEF26Q96DR7 871 aa14.52□□□□□ -0.08
CCDC88C-201ENST00000331194 PIGSQ96S52 555 aa14.52□□□□□ -0.08
CCDC88C-201ENST00000331194 TMEM47Q9BQJ4 181 aa14.52□□□□□ -0.08
CCDC88C-201ENST00000331194 CACNA1SQ13698 1873 aa14.52□□□□□ -0.08
CCDC88C-201ENST00000331194 TCRBV7S2A1N4TA0A589 114 aa14.52□□□□□ -0.08
CCDC88C-201ENST00000331194 RIPK2O43353 540 aa14.52□□□□□ -0.08
CCDC88C-201ENST00000331194 FLOT1O75955 427 aa14.52□□□□□ -0.08
CCDC88C-201ENST00000331194 ZNF131P52739 623 aa14.52□□□□□ -0.08
CCDC88C-201ENST00000331194 RNF220Q5VTB9 566 aa14.52□□□□□ -0.08
CCDC88C-201ENST00000331194 COL23A1Q86Y22 540 aaPredicted RBP14.52□□□□□ -0.08
CCDC88C-201ENST00000331194 MKNK2Q9HBH9 465 aa14.52□□□□□ -0.08
CCDC88C-201ENST00000331194 TAS2R14Q9NYV8 317 aa14.52□□□□□ -0.08
CCDC88C-201ENST00000331194 STK17AQ9UEE5 414 aa14.52□□□□□ -0.08
CCDC88C-201ENST00000331194 CASZ1Q86V15 1759 aa14.52□□□□□ -0.09
CCDC88C-201ENST00000331194 TMEM110-MUSTN1A8MSY1 372 aa14.52□□□□□ -0.09
CCDC88C-201ENST00000331194 RPS6KA3P51812 740 aa14.52□□□□□ -0.09
CCDC88C-201ENST00000331194 SLMAPQ14BN4 828 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms