RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 JAM2P57087 298 aa17.53■□□□□ 0.4
USHBP1-202ENST00000324554 BCAS4Q8TDM0 211 aa17.53■□□□□ 0.4
USHBP1-202ENST00000324554 BORCS6Q96GS4 357 aa17.53■□□□□ 0.4
USHBP1-202ENST00000324554 IKZF4Q9H2S9 585 aa17.53■□□□□ 0.4
USHBP1-202ENST00000324554 HACL1Q9UJ83 578 aa17.53■□□□□ 0.4
USHBP1-202ENST00000324554 EIF3DO15371 548 aaKnown RBP eCLIP17.53■□□□□ 0.4
USHBP1-202ENST00000324554 PAK2Q13177 524 aa17.53■□□□□ 0.4
USHBP1-202ENST00000324554 LRCH2Q5VUJ6 765 aa17.53■□□□□ 0.4
USHBP1-202ENST00000324554 C1orf186Q6ZWK4 172 aa17.53■□□□□ 0.4
USHBP1-202ENST00000324554 TPH2Q8IWU9 490 aa17.53■□□□□ 0.4
USHBP1-202ENST00000324554 USP38Q8NB14 1042 aa17.53■□□□□ 0.4
USHBP1-202ENST00000324554 DYDC2Q96IM9 177 aa17.53■□□□□ 0.4
USHBP1-202ENST00000324554 FHDC1Q9C0D6 1143 aaPredicted RBP17.53■□□□□ 0.4
USHBP1-202ENST00000324554 ZBTB39O15060 712 aa17.52■□□□□ 0.4
USHBP1-202ENST00000324554 RAD51CO43502 376 aa17.52■□□□□ 0.4
USHBP1-202ENST00000324554 FAM13AO94988 1023 aa17.52■□□□□ 0.4
USHBP1-202ENST00000324554 NMT1P30419 496 aaKnown RBP17.52■□□□□ 0.4
USHBP1-202ENST00000324554 CAP2P40123 477 aa17.52■□□□□ 0.4
USHBP1-202ENST00000324554 PPP2R5CQ13362 524 aa17.52■□□□□ 0.4
USHBP1-202ENST00000324554 ALKBH5Q6P6C2 394 aaKnown RBP17.52■□□□□ 0.4
USHBP1-202ENST00000324554 FAM83AQ86UY5 434 aa17.52■□□□□ 0.4
USHBP1-202ENST00000324554 NENFQ9UMX5 172 aa17.52■□□□□ 0.4
USHBP1-202ENST00000324554 GTPBP10A4D1E9 387 aaKnown RBP17.52■□□□□ 0.4
USHBP1-202ENST00000324554 ZNF280AP59817 542 aaPredicted RBP17.52■□□□□ 0.4
USHBP1-202ENST00000324554 SKOR1P84550 965 aa17.52■□□□□ 0.4
USHBP1-202ENST00000324554 PTPROQ16827 1216 aa17.52■□□□□ 0.4
USHBP1-202ENST00000324554 GJB7Q6PEY0 223 aa17.52■□□□□ 0.4
USHBP1-202ENST00000324554 MYCT1Q8N699 235 aa17.52■□□□□ 0.4
USHBP1-202ENST00000324554 SLC5A5Q92911 643 aa17.52■□□□□ 0.4
USHBP1-202ENST00000324554 ARHGEF10LQ9HCE6 1279 aa17.52■□□□□ 0.4
USHBP1-202ENST00000324554 TMEM59LQ9UK28 342 aa17.52■□□□□ 0.4
USHBP1-202ENST00000324554 KCNK3O14649 394 aa17.51■□□□□ 0.39
USHBP1-202ENST00000324554 FLOT1O75955 427 aa17.51■□□□□ 0.39
USHBP1-202ENST00000324554 PDCLQ13371 301 aa17.51■□□□□ 0.39
USHBP1-202ENST00000324554 ZC2HC1CQ53FD0 456 aaPredicted RBP17.51■□□□□ 0.39
USHBP1-202ENST00000324554 CFAP58Q5T655 872 aa17.51■□□□□ 0.39
USHBP1-202ENST00000324554 CCDC174Q6PII3 467 aa17.51■□□□□ 0.39
USHBP1-202ENST00000324554 PACS2Q86VP3 889 aa17.51■□□□□ 0.39
USHBP1-202ENST00000324554 KLHL7Q8IXQ5 586 aa17.51■□□□□ 0.39
USHBP1-202ENST00000324554 LRRC57Q8N9N7 239 aa17.51■□□□□ 0.39
USHBP1-202ENST00000324554 TEPSINQ96N21 525 aa17.51■□□□□ 0.39
USHBP1-202ENST00000324554 TMX2Q9Y320 296 aa17.51■□□□□ 0.39
USHBP1-202ENST00000324554 RBBP6Q7Z6E9 1792 aaKnown RBP17.51■□□□□ 0.39
USHBP1-202ENST00000324554 GCOM1H8Y6P7 765 aaPredicted RBP17.51■□□□□ 0.39
USHBP1-202ENST00000324554 CES2O00748 559 aa17.51■□□□□ 0.39
USHBP1-202ENST00000324554 POLR2MP0CAP2 368 aa17.51■□□□□ 0.39
USHBP1-202ENST00000324554 ANXA13P27216 316 aa17.51■□□□□ 0.39
USHBP1-202ENST00000324554 ATP1A2P50993 1020 aa17.51■□□□□ 0.39
USHBP1-202ENST00000324554 UBXN2AP68543 259 aa17.51■□□□□ 0.39
USHBP1-202ENST00000324554 TRAF1Q13077 416 aa17.51■□□□□ 0.39
USHBP1-202ENST00000324554 RPS6KA1Q15418 735 aa17.51■□□□□ 0.39
USHBP1-202ENST00000324554 NBPF12Q5TAG4 269 aaPredicted RBP17.51■□□□□ 0.39
USHBP1-202ENST00000324554 FKBP1CQ5VVH2 108 aa17.51■□□□□ 0.39
USHBP1-202ENST00000324554 TEX2Q8IWB9 1127 aa17.51■□□□□ 0.39
USHBP1-202ENST00000324554 MREGQ8N565 214 aa17.51■□□□□ 0.39
USHBP1-202ENST00000324554 FIZ1Q96SL8 496 aa17.51■□□□□ 0.39
USHBP1-202ENST00000324554 PARVGQ9HBI0 331 aa17.51■□□□□ 0.39
USHBP1-202ENST00000324554 FBXO28Q9NVF7 368 aa17.51■□□□□ 0.39
USHBP1-202ENST00000324554 NFIL3Q16649 462 aa17.5■□□□□ 0.39
USHBP1-202ENST00000324554 DLK2Q6UY11 383 aa17.5■□□□□ 0.39
USHBP1-202ENST00000324554 FAM186BQ8IYM0 893 aa17.5■□□□□ 0.39
USHBP1-202ENST00000324554 TAF4BQ92750 862 aa17.5■□□□□ 0.39
USHBP1-202ENST00000324554 DEFB129Q9H1M3 183 aa17.5■□□□□ 0.39
USHBP1-202ENST00000324554 FRMPD4Q14CM0 1322 aa17.5■□□□□ 0.39
USHBP1-202ENST00000324554 KIF4AO95239 1232 aa17.5■□□□□ 0.39
USHBP1-202ENST00000324554 PSMC2P35998 433 aaKnown RBP17.5■□□□□ 0.39
USHBP1-202ENST00000324554 NOP2P46087 812 aaKnown RBP17.5■□□□□ 0.39
USHBP1-202ENST00000324554 IFI16Q16666 785 aaKnown RBP17.5■□□□□ 0.39
USHBP1-202ENST00000324554 KCTD19Q17RG1 926 aaPredicted RBP17.5■□□□□ 0.39
USHBP1-202ENST00000324554 TRPM4Q8TD43 1214 aa17.5■□□□□ 0.39
USHBP1-202ENST00000324554 RANBP17Q9H2T7 1088 aaKnown RBP17.5■□□□□ 0.39
USHBP1-202ENST00000324554 SPON1Q9HCB6 807 aa17.5■□□□□ 0.39
USHBP1-202ENST00000324554 GOPCQ9HD26 462 aa17.5■□□□□ 0.39
USHBP1-202ENST00000324554 WRAP73Q9P2S5 460 aaPredicted RBP17.5■□□□□ 0.39
USHBP1-202ENST00000324554 ATP8B3O60423 1300 aa17.5■□□□□ 0.39
USHBP1-202ENST00000324554 GAS7O60861 476 aa17.49■□□□□ 0.39
USHBP1-202ENST00000324554 COG2Q14746 738 aa17.49■□□□□ 0.39
USHBP1-202ENST00000324554 CEP55Q53EZ4 464 aa17.49■□□□□ 0.39
USHBP1-202ENST00000324554 ANGEL2Q5VTE6 544 aaKnown RBP17.49■□□□□ 0.39
USHBP1-202ENST00000324554 KSR1Q8IVT5 923 aa17.49■□□□□ 0.39
USHBP1-202ENST00000324554 PHF20L1A8MW92 1017 aa17.49■□□□□ 0.39
USHBP1-202ENST00000324554 EBAG9O00559 213 aa17.49■□□□□ 0.39
USHBP1-202ENST00000324554 DDX3XO00571 662 aaKnown RBP eCLIP17.49■□□□□ 0.39
USHBP1-202ENST00000324554 ZBTB48P10074 688 aaPredicted RBP17.49■□□□□ 0.39
USHBP1-202ENST00000324554 RPS12P25398 132 aaKnown RBP17.49■□□□□ 0.39
USHBP1-202ENST00000324554 ZNF131P52739 623 aa17.49■□□□□ 0.39
USHBP1-202ENST00000324554 ERVK-9P63128 1117 aa17.49■□□□□ 0.39
USHBP1-202ENST00000324554 TNNC1P63316 161 aa17.49■□□□□ 0.39
USHBP1-202ENST00000324554 VPS36Q86VN1 386 aa17.49■□□□□ 0.39
USHBP1-202ENST00000324554 EFCAB13Q8IY85 973 aa17.49■□□□□ 0.39
USHBP1-202ENST00000324554 PROCA1Q8NCQ7 364 aaPredicted RBP17.49■□□□□ 0.39
USHBP1-202ENST00000324554 TPCN2Q8NHX9 752 aa17.49■□□□□ 0.39
USHBP1-202ENST00000324554 PPM1EQ8WY54 764 aa17.49■□□□□ 0.39
USHBP1-202ENST00000324554 ZNF341Q9BYN7 854 aa17.49■□□□□ 0.39
USHBP1-202ENST00000324554 SAMM50Q9Y512 469 aa17.49■□□□□ 0.39
USHBP1-202ENST00000324554 ECHS1P30084 290 aa17.48■□□□□ 0.39
USHBP1-202ENST00000324554 INPP5BP32019 993 aa17.48■□□□□ 0.39
USHBP1-202ENST00000324554 ZNF720Q7Z2F6 126 aa17.48■□□□□ 0.39
USHBP1-202ENST00000324554 WHAMMQ8TF30 809 aa17.48■□□□□ 0.39
USHBP1-202ENST00000324554 RNPC3Q96LT9 517 aaKnown RBP17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms