RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 KCTD17Q8N5Z5 321 aa17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 SPATA20Q8TB22 786 aa17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 NLRP4Q96MN2 994 aa17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 GSDMAQ96QA5 445 aa17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 SENP6Q9GZR1 1112 aaPredicted RBP17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 PCDH10Q9P2E7 1040 aa17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 EVPLQ92817 2033 aa17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 KIAA0100Q14667 2235 aaKnown RBP17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 CSDE1O75534 798 aaKnown RBP17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 GCNT3O95395 438 aa17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 SRGAP2CP0DJJ0 459 aa17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 ZC2HC1CQ53FD0 456 aaPredicted RBP17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 ZNF484Q5JVG2 852 aa17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 KIAA0895Q8NCT3 520 aa17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 RNF214Q8ND24 703 aa17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 ASAP3Q8TDY4 903 aa17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 ARMC5Q96C12 935 aa17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 IKZF4Q9H2S9 585 aa17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 PRDM10Q9NQV6 1147 aa17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 TRMT13Q9NUP7 481 aaKnown RBP17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 KAT6AQ92794 2004 aa17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 NRCAMQ92823 1304 aa17.03■□□□□ 0.32
PDLIM5-202ENST00000318007 MYH11P35749 1972 aa17.03■□□□□ 0.32
PDLIM5-202ENST00000318007 TRIP12Q14669 1992 aaPredicted RBP17.03■□□□□ 0.32
PDLIM5-202ENST00000318007 LAMA2P24043 3122 aaKnown RBP17.03■□□□□ 0.32
PDLIM5-202ENST00000318007 LRRIQ4A6NIV6 560 aa17.03■□□□□ 0.32
PDLIM5-202ENST00000318007 K7ENM7 598 aa17.03■□□□□ 0.32
PDLIM5-202ENST00000318007 SLC16A4O15374 487 aa17.03■□□□□ 0.32
PDLIM5-202ENST00000318007 LETM1O95202 739 aaPredicted RBP17.03■□□□□ 0.32
PDLIM5-202ENST00000318007 SGPL1O95470 568 aa17.03■□□□□ 0.32
PDLIM5-202ENST00000318007 MYL1P05976 194 aa17.03■□□□□ 0.32
PDLIM5-202ENST00000318007 CCDC192P0DO97 292 aa17.03■□□□□ 0.32
PDLIM5-202ENST00000318007 MYBP10242 640 aa17.03■□□□□ 0.32
PDLIM5-202ENST00000318007 FAM26FQ5R3K3 315 aa17.03■□□□□ 0.32
PDLIM5-202ENST00000318007 NT5DC1Q5TFE4 455 aa17.03■□□□□ 0.32
PDLIM5-202ENST00000318007 NELFCDQ8IXH7 590 aa17.03■□□□□ 0.32
PDLIM5-202ENST00000318007 FAM178BQ8IXR5 827 aa17.03■□□□□ 0.32
PDLIM5-202ENST00000318007 ELOA2Q8IYF1 753 aaPredicted RBP17.03■□□□□ 0.32
PDLIM5-202ENST00000318007 MCPH1Q8NEM0 835 aa17.03■□□□□ 0.32
PDLIM5-202ENST00000318007 PRPF31Q8WWY3 499 aaKnown RBP17.03■□□□□ 0.32
PDLIM5-202ENST00000318007 DRC1Q96MC2 740 aa17.03■□□□□ 0.32
PDLIM5-202ENST00000318007 PDLIM7Q9NR12 457 aa17.03■□□□□ 0.32
PDLIM5-202ENST00000318007 KCND2Q9NZV8 630 aa17.03■□□□□ 0.32
PDLIM5-202ENST00000318007 USP20Q9Y2K6 914 aa17.03■□□□□ 0.32
PDLIM5-202ENST00000318007 COL4A3BPQ9Y5P4 624 aa17.03■□□□□ 0.32
PDLIM5-202ENST00000318007 DNM1LO00429 736 aa17.02■□□□□ 0.32
PDLIM5-202ENST00000318007 KPNA6O60684 536 aa17.02■□□□□ 0.32
PDLIM5-202ENST00000318007 CYP2C9P11712 490 aa17.02■□□□□ 0.32
PDLIM5-202ENST00000318007 CD44P16070 742 aaKnown RBP17.02■□□□□ 0.32
PDLIM5-202ENST00000318007 RFC5P40937 340 aa17.02■□□□□ 0.32
PDLIM5-202ENST00000318007 KCNA1Q09470 495 aa17.02■□□□□ 0.32
PDLIM5-202ENST00000318007 MORC3Q14149 939 aa17.02■□□□□ 0.32
PDLIM5-202ENST00000318007 RETREG2Q8NC44 543 aa17.02■□□□□ 0.32
PDLIM5-202ENST00000318007 CCDC47Q96A33 483 aaKnown RBP17.02■□□□□ 0.32
PDLIM5-202ENST00000318007 EEF2KMTQ96G04 330 aa17.02■□□□□ 0.32
PDLIM5-202ENST00000318007 SCLT1Q96NL6 688 aa17.02■□□□□ 0.32
PDLIM5-202ENST00000318007 RMND1Q9NWS8 449 aa17.02■□□□□ 0.32
PDLIM5-202ENST00000318007 SUCLA2Q9P2R7 463 aaPredicted RBP17.02■□□□□ 0.32
PDLIM5-202ENST00000318007 OGDHLQ9ULD0 1010 aa17.02■□□□□ 0.32
PDLIM5-202ENST00000318007 ODF2LQ9ULJ1 636 aa17.02■□□□□ 0.32
PDLIM5-202ENST00000318007 MOXD2PA6NHM9 499 aa17.02■□□□□ 0.31
PDLIM5-202ENST00000318007 RHOBTB3O94955 611 aa17.02■□□□□ 0.31
PDLIM5-202ENST00000318007 GLRA2P23416 452 aa17.02■□□□□ 0.31
PDLIM5-202ENST00000318007 STX17P56962 302 aa17.02■□□□□ 0.31
PDLIM5-202ENST00000318007 DMP1Q13316 513 aaPredicted RBP17.02■□□□□ 0.31
PDLIM5-202ENST00000318007 STX1AQ16623 288 aa17.02■□□□□ 0.31
PDLIM5-202ENST00000318007 LRSAM1Q6UWE0 723 aa17.02■□□□□ 0.31
PDLIM5-202ENST00000318007 DNAJB3Q8WWF6 145 aa17.02■□□□□ 0.31
PDLIM5-202ENST00000318007 FUCA2Q9BTY2 467 aa17.02■□□□□ 0.31
PDLIM5-202ENST00000318007 GTF2IRD1Q9UHL9 959 aa17.02■□□□□ 0.31
PDLIM5-202ENST00000318007 NOD1Q9Y239 953 aa17.02■□□□□ 0.31
PDLIM5-202ENST00000318007 SCN10AQ9Y5Y9 1956 aa17.02■□□□□ 0.31
PDLIM5-202ENST00000318007 ADGRA3Q8IWK6 1321 aa17.01■□□□□ 0.31
PDLIM5-202ENST00000318007 PVALEFA0A1B0GWK0 134 aa17.01■□□□□ 0.31
PDLIM5-202ENST00000318007 PRPF6O94906 941 aaKnown RBP17.01■□□□□ 0.31
PDLIM5-202ENST00000318007 PLS3P13797 630 aa17.01■□□□□ 0.31
PDLIM5-202ENST00000318007 PRCPP42785 496 aa17.01■□□□□ 0.31
PDLIM5-202ENST00000318007 NLRP12P59046 1061 aa17.01■□□□□ 0.31
PDLIM5-202ENST00000318007 NKX3-2P78367 333 aa17.01■□□□□ 0.31
PDLIM5-202ENST00000318007 ZNF658Q5TYW1 1059 aaPredicted RBP17.01■□□□□ 0.31
PDLIM5-202ENST00000318007 CNNM4Q6P4Q7 775 aa17.01■□□□□ 0.31
PDLIM5-202ENST00000318007 GAS2L3Q86XJ1 694 aa17.01■□□□□ 0.31
PDLIM5-202ENST00000318007 TMEM106CQ9BVX2 250 aa17.01■□□□□ 0.31
PDLIM5-202ENST00000318007 LARSQ9P2J5 1176 aaKnown RBP17.01■□□□□ 0.31
PDLIM5-202ENST00000318007 FRMD3A2A2Y4 597 aa17■□□□□ 0.31
PDLIM5-202ENST00000318007 CTSHP09668 335 aa17■□□□□ 0.31
PDLIM5-202ENST00000318007 NPTX2P47972 431 aa17■□□□□ 0.31
PDLIM5-202ENST00000318007 CAPSQ13938 189 aa17■□□□□ 0.31
PDLIM5-202ENST00000318007 KCNB1Q14721 858 aa17■□□□□ 0.31
PDLIM5-202ENST00000318007 PTGISQ16647 500 aa17■□□□□ 0.31
PDLIM5-202ENST00000318007 KIZQ2M2Z5 673 aa17■□□□□ 0.31
PDLIM5-202ENST00000318007 HSP90AA4PQ58FG1 418 aa17■□□□□ 0.31
PDLIM5-202ENST00000318007 RNF149Q8NC42 400 aa17■□□□□ 0.31
PDLIM5-202ENST00000318007 PSPC1Q8WXF1 523 aaKnown RBP17■□□□□ 0.31
PDLIM5-202ENST00000318007 KIFAP3Q92845 792 aa17■□□□□ 0.31
PDLIM5-202ENST00000318007 WNT8BQ93098 351 aa17■□□□□ 0.31
PDLIM5-202ENST00000318007 TRPV6Q9H1D0 765 aa17■□□□□ 0.31
PDLIM5-202ENST00000318007 KMT5AQ9NQR1 393 aa17■□□□□ 0.31
PDLIM5-202ENST00000318007 CTNND2Q9UQB3 1225 aa17■□□□□ 0.31
PDLIM5-202ENST00000318007 TRIM49BA6NDI0 452 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms