RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 TCEA3O75764 348 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 RAD23BP54727 409 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 EPHB1P54762 984 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 RNASELQ05823 741 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 PDE4BQ07343 736 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 BST2Q10589 180 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 ATP13A4Q4VNC1 1196 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 E4F1Q66K89 784 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 GGT6Q6P531 493 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 BEND5Q7L4P6 421 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 ZNF444Q8N0Y2 327 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 OTUB1Q96FW1 271 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 CDHR1Q96JP9 859 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 TRIM2Q9C040 744 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 SLC7A5P2Q9GIP4 190 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 COPS7BQ9H9Q2 264 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 KCTD5Q9NXV2 234 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 IPO11Q9UI26 975 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 PCDHGA1Q9Y5H4 931 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 SPDYE3A6NKU9 549 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 RIMBP2O15034 1052 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 TIGD7Q6NT04 549 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 PROSER1Q86XN7 944 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 SLC4A9Q96Q91 983 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 VPS35Q96QK1 796 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 PPP1R16BQ96T49 567 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 SNX6Q9UNH7 406 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 SYNJ2BP-COX16A0A087WUM0 186 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 PDZK1P1A8MUH7 402 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 PSMA7O14818 248 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 RAD51DO75771 328 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 EIF3EP60228 445 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 CA9Q16790 459 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 TYW1BQ6NUM6 668 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 TSHZ1Q6ZSZ6 1077 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 CIR1Q86X95 450 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 TRIM50Q86XT4 487 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 LPIN2Q92539 896 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 JADE3Q92613 823 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 TNPO1Q92973 898 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 SUCLG2Q96I99 432 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 CCDC85AQ96PX6 553 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 ABCG4Q9H172 646 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 CXorf56Q9H5V9 222 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 ERAP1Q9NZ08 941 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 COX16Q9P0S2 106 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 ZNF222Q9UK12 451 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 ST20-MTHFSA0A0A6YYL1 179 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 TMEM127O75204 238 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 SMNDC1O75940 238 aaKnown RBP eCLIP8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 APOL3O95236 402 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 INHBAP08476 426 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 PLCG2P16885 1265 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 BNIP1Q12981 228 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 EIF2B1Q14232 305 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 GFOD2Q3B7J2 385 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 FAM76BQ5HYJ3 339 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 DHX58Q96C10 678 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 MPHOSPH9Q99550 1183 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 YIPF2Q9BWQ6 316 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 PACSIN1Q9BY11 444 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 DNAJC11Q9NVH1 559 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 TSR3Q9UJK0 312 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 NUP50Q9UKX7 468 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 NUTM2BA6NNL0 878 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 FAM25EA8MYX2 175 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 NUTM2EB1AL46 878 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 HSMCR30P0CW71 290 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 ANKRD26P1Q6NSI1 321 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 TTC13Q8NBP0 860 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 NOX5Q96PH1 765 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 COMMD9Q9P000 198 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 AKAP7Q9P0M2 348 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 KPNA5O15131 536 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 GYG2O15488 501 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 TTI1O43156 1089 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 GAS7O60861 476 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 PIK3R1P27986 724 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 GCLCP48506 637 aaPredicted RBP8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 SERPINB4P48594 390 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 RHAGQ02094 409 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 PDIA2Q13087 525 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 THOC5Q13769 683 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 CAMK1Q14012 370 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 CASP8Q14790 479 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 KRT39Q6A163 491 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 IZUMO2Q6UXV1 221 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 SIX6OS1Q8N1H7 587 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 FAM160A2Q8N612 972 aaPredicted RBP8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 PLEKHA8Q96JA3 519 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 MMTAG2Q9BU76 263 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 CASS4Q9NQ75 786 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 SLC35C2Q9NQQ7 365 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 PARP2Q9UGN5 583 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 PRR23AA6NEV1 266 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 SNTNA6NMZ2 147 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 ZNF432O94892 652 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 GJB2P29033 226 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 STX4Q12846 297 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms