RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 IGF2BP3O00425 579 aaKnown RBP eCLIP17.08■□□□□ 0.33
LSM6-201ENST00000296581 SLC16A3O15427 465 aaKnown RBP17.08■□□□□ 0.33
LSM6-201ENST00000296581 FECHP22830 423 aa17.08■□□□□ 0.33
LSM6-201ENST00000296581 MAPK4P31152 587 aa17.08■□□□□ 0.33
LSM6-201ENST00000296581 FAM102BQ5T8I3 360 aa17.08■□□□□ 0.33
LSM6-201ENST00000296581 FRMD5Q7Z6J6 570 aa17.08■□□□□ 0.33
LSM6-201ENST00000296581 RETREG2Q8NC44 543 aa17.08■□□□□ 0.33
LSM6-201ENST00000296581 CPLX3Q8WVH0 158 aa17.08■□□□□ 0.33
LSM6-201ENST00000296581 NUP58Q9BVL2 599 aa17.08■□□□□ 0.33
LSM6-201ENST00000296581 NIFKQ9BYG3 293 aaKnown RBP17.08■□□□□ 0.33
LSM6-201ENST00000296581 TTYH3Q9C0H2 523 aa17.08■□□□□ 0.33
LSM6-201ENST00000296581 C17orf75Q9HAS0 396 aa17.08■□□□□ 0.33
LSM6-201ENST00000296581 XPNPEP1Q9NQW7 623 aa17.08■□□□□ 0.33
LSM6-201ENST00000296581 RNF225M0QZC1 329 aaPredicted RBP17.08■□□□□ 0.32
LSM6-201ENST00000296581 ARHGAP6O43182 974 aa17.08■□□□□ 0.32
LSM6-201ENST00000296581 RTP1P59025 263 aa17.08■□□□□ 0.32
LSM6-201ENST00000296581 GTF2BQ00403 316 aa17.08■□□□□ 0.32
LSM6-201ENST00000296581 FIGNQ5HY92 759 aa17.08■□□□□ 0.32
LSM6-201ENST00000296581 FAM160B1Q5W0V3 765 aa17.08■□□□□ 0.32
LSM6-201ENST00000296581 KSR1Q8IVT5 923 aa17.08■□□□□ 0.32
LSM6-201ENST00000296581 PDCL2Q8N4E4 241 aa17.08■□□□□ 0.32
LSM6-201ENST00000296581 GOLGA5Q8TBA6 731 aa17.08■□□□□ 0.32
LSM6-201ENST00000296581 GPR20Q99678 358 aa17.08■□□□□ 0.32
LSM6-201ENST00000296581 GBP3Q9H0R5 595 aa17.08■□□□□ 0.32
LSM6-201ENST00000296581 FAM184BQ9ULE4 1060 aa17.08■□□□□ 0.32
LSM6-201ENST00000296581 DIS3Q9Y2L1 958 aaKnown RBP17.08■□□□□ 0.32
LSM6-201ENST00000296581 RASSF10A6NK89 507 aa17.07■□□□□ 0.32
LSM6-201ENST00000296581 SLC10A3P09131 477 aa17.07■□□□□ 0.32
LSM6-201ENST00000296581 TCF7P36402 384 aaPredicted RBP17.07■□□□□ 0.32
LSM6-201ENST00000296581 TTLL4Q14679 1199 aa17.07■□□□□ 0.32
LSM6-201ENST00000296581 MAMDC4Q6UXC1 1216 aa17.07■□□□□ 0.32
LSM6-201ENST00000296581 HS2ST1Q7LGA3 356 aa17.07■□□□□ 0.32
LSM6-201ENST00000296581 PLEKHH3Q7Z736 793 aa17.07■□□□□ 0.32
LSM6-201ENST00000296581 SCFD2Q8WU76 684 aa17.07■□□□□ 0.32
LSM6-201ENST00000296581 TMEM174Q8WUU8 243 aa17.07■□□□□ 0.32
LSM6-201ENST00000296581 SPIRE2Q8WWL2 714 aa17.07■□□□□ 0.32
LSM6-201ENST00000296581 IQCDQ96DY2 449 aa17.07■□□□□ 0.32
LSM6-201ENST00000296581 NTPCRQ9BSD7 190 aaKnown RBP17.07■□□□□ 0.32
LSM6-201ENST00000296581 NAA15Q9BXJ9 866 aaKnown RBP17.07■□□□□ 0.32
LSM6-201ENST00000296581 TMEM206Q9H813 350 aa17.07■□□□□ 0.32
LSM6-201ENST00000296581 ATP6V0A4Q9HBG4 840 aa17.07■□□□□ 0.32
LSM6-201ENST00000296581 VTA1Q9NP79 307 aa17.07■□□□□ 0.32
LSM6-201ENST00000296581 AGPAT3Q9NRZ7 376 aa17.07■□□□□ 0.32
LSM6-201ENST00000296581 DMAC2Q9NW81 257 aa17.07■□□□□ 0.32
LSM6-201ENST00000296581 CAPN11Q9UMQ6 739 aa17.07■□□□□ 0.32
LSM6-201ENST00000296581 SIK3Q9Y2K2 1263 aa17.07■□□□□ 0.32
LSM6-201ENST00000296581 RBM47A0AV96 593 aaKnown RBP17.07■□□□□ 0.32
LSM6-201ENST00000296581 LGR5O75473 907 aa17.07■□□□□ 0.32
LSM6-201ENST00000296581 AKAP3O75969 853 aa17.07■□□□□ 0.32
LSM6-201ENST00000296581 STAT5BP51692 787 aa17.07■□□□□ 0.32
LSM6-201ENST00000296581 PEX3P56589 373 aa17.07■□□□□ 0.32
LSM6-201ENST00000296581 E4F1Q66K89 784 aaPredicted RBP17.07■□□□□ 0.32
LSM6-201ENST00000296581 HAUS6Q7Z4H7 955 aa17.07■□□□□ 0.32
LSM6-201ENST00000296581 CCAR2Q8N163 923 aaKnown RBP17.07■□□□□ 0.32
LSM6-201ENST00000296581 ACCSQ96QU6 501 aa17.07■□□□□ 0.32
LSM6-201ENST00000296581 CEP89Q96ST8 783 aa17.07■□□□□ 0.32
LSM6-201ENST00000296581 IKZF4Q9H2S9 585 aa17.07■□□□□ 0.32
LSM6-201ENST00000296581 TTC26A0AVF1 554 aa17.06■□□□□ 0.32
LSM6-201ENST00000296581 CLIC2O15247 247 aa17.06■□□□□ 0.32
LSM6-201ENST00000296581 TXNP10599 105 aaKnown RBP17.06■□□□□ 0.32
LSM6-201ENST00000296581 PPP2R3AQ06190 1150 aa17.06■□□□□ 0.32
LSM6-201ENST00000296581 MYBPC2Q14324 1141 aa17.06■□□□□ 0.32
LSM6-201ENST00000296581 MTERF2Q49AM1 385 aa17.06■□□□□ 0.32
LSM6-201ENST00000296581 TAPT1Q6NXT6 567 aa17.06■□□□□ 0.32
LSM6-201ENST00000296581 SLC9A9Q8IVB4 645 aa17.06■□□□□ 0.32
LSM6-201ENST00000296581 HVCN1Q96D96 273 aa17.06■□□□□ 0.32
LSM6-201ENST00000296581 MKNK1Q9BUB5 465 aa17.06■□□□□ 0.32
LSM6-201ENST00000296581 METTL14Q9HCE5 456 aaKnown RBP17.06■□□□□ 0.32
LSM6-201ENST00000296581 PDGFCQ9NRA1 345 aa17.06■□□□□ 0.32
LSM6-201ENST00000296581 ABHD10Q9NUJ1 306 aa17.06■□□□□ 0.32
LSM6-201ENST00000296581 ARMCX3Q9UH62 379 aaPredicted RBP17.06■□□□□ 0.32
LSM6-201ENST00000296581 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.06■□□□□ 0.32
LSM6-201ENST00000296581 KRT9P35527 623 aa17.05■□□□□ 0.32
LSM6-201ENST00000296581 NPTX2P47972 431 aa17.05■□□□□ 0.32
LSM6-201ENST00000296581 KLK7P49862 253 aa17.05■□□□□ 0.32
LSM6-201ENST00000296581 DMP1Q13316 513 aaPredicted RBP17.05■□□□□ 0.32
LSM6-201ENST00000296581 MAPK8IP2Q13387 824 aaPredicted RBP17.05■□□□□ 0.32
LSM6-201ENST00000296581 TARBP2Q15633 366 aaKnown RBP17.05■□□□□ 0.32
LSM6-201ENST00000296581 HSDL1Q3SXM5 330 aa17.05■□□□□ 0.32
LSM6-201ENST00000296581 DHX37Q8IY37 1157 aaKnown RBP17.05■□□□□ 0.32
LSM6-201ENST00000296581 BSNDQ8WZ55 320 aa17.05■□□□□ 0.32
LSM6-201ENST00000296581 KATNBL1Q9H079 304 aa17.05■□□□□ 0.32
LSM6-201ENST00000296581 DHX33Q9H6R0 707 aaKnown RBP17.05■□□□□ 0.32
LSM6-201ENST00000296581 NRBP2Q9NSY0 501 aa17.05■□□□□ 0.32
LSM6-201ENST00000296581 TLL2Q9Y6L7 1015 aa17.05■□□□□ 0.32
LSM6-201ENST00000296581 A0A1W2PQJ5 194 aa17.05■□□□□ 0.32
LSM6-201ENST00000296581 SLC15A5A6NIM6 579 aa17.05■□□□□ 0.32
LSM6-201ENST00000296581 SLC16A4O15374 487 aa17.05■□□□□ 0.32
LSM6-201ENST00000296581 EPB41P11171 864 aaKnown RBP17.05■□□□□ 0.32
LSM6-201ENST00000296581 CASP4P49662 377 aa17.05■□□□□ 0.32
LSM6-201ENST00000296581 SMTNP53814 917 aa17.05■□□□□ 0.32
LSM6-201ENST00000296581 INHBEP58166 350 aa17.05■□□□□ 0.32
LSM6-201ENST00000296581 EMC2Q15006 297 aa17.05■□□□□ 0.32
LSM6-201ENST00000296581 C12orf56Q8IXR9 622 aa17.05■□□□□ 0.32
LSM6-201ENST00000296581 TMEM161BQ8NDZ6 487 aa17.05■□□□□ 0.32
LSM6-201ENST00000296581 SECISBP2LQ93073 1101 aaKnown RBP17.05■□□□□ 0.32
LSM6-201ENST00000296581 BORCS6Q96GS4 357 aa17.05■□□□□ 0.32
LSM6-201ENST00000296581 FAM167AQ96KS9 214 aa17.05■□□□□ 0.32
LSM6-201ENST00000296581 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.05■□□□□ 0.32
LSM6-201ENST00000296581 CPA4Q9UI42 421 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms