RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 STX10O60499 249 aa18.1■□□□□ 0.49
USP4-201ENST00000265560 ABL1P00519 1130 aa18.1■□□□□ 0.49
USP4-201ENST00000265560 OATP04181 439 aa18.1■□□□□ 0.49
USP4-201ENST00000265560 TRIM49P0CI25 452 aa18.1■□□□□ 0.49
USP4-201ENST00000265560 TRIM49CP0CI26 452 aa18.1■□□□□ 0.49
USP4-201ENST00000265560 HS2ST1Q7LGA3 356 aa18.1■□□□□ 0.49
USP4-201ENST00000265560 DRC1Q96MC2 740 aa18.1■□□□□ 0.49
USP4-201ENST00000265560 IRX2Q9BZI1 471 aaPredicted RBP18.1■□□□□ 0.49
USP4-201ENST00000265560 SEL1LQ9UBV2 794 aa18.1■□□□□ 0.49
USP4-201ENST00000265560 MAFBQ9Y5Q3 323 aaPredicted RBP18.1■□□□□ 0.49
USP4-201ENST00000265560 DENND3A2RUS2 1198 aa18.1■□□□□ 0.49
USP4-201ENST00000265560 PLEKP08567 350 aaPredicted RBP18.1■□□□□ 0.49
USP4-201ENST00000265560 XKR3Q5GH77 459 aa18.1■□□□□ 0.49
USP4-201ENST00000265560 SEPT1Q8WYJ6 367 aa18.1■□□□□ 0.49
USP4-201ENST00000265560 PANX2Q96RD6 677 aa18.1■□□□□ 0.49
USP4-201ENST00000265560 PARK7Q99497 189 aaKnown RBP18.1■□□□□ 0.49
USP4-201ENST00000265560 POLR3FQ9H1D9 316 aaPredicted RBP18.1■□□□□ 0.49
USP4-201ENST00000265560 KMT5AQ9NQR1 393 aa18.1■□□□□ 0.49
USP4-201ENST00000265560 PPP2R2CQ9Y2T4 447 aa18.1■□□□□ 0.49
USP4-201ENST00000265560 IGSF9BQ9UPX0 1349 aa18.1■□□□□ 0.49
USP4-201ENST00000265560 ANKRD63C9JTQ0 380 aa18.09■□□□□ 0.49
USP4-201ENST00000265560 EIF3DO15371 548 aaKnown RBP eCLIP18.09■□□□□ 0.49
USP4-201ENST00000265560 EXOC3O60645 756 aa18.09■□□□□ 0.49
USP4-201ENST00000265560 PPP1R37O75864 691 aa18.09■□□□□ 0.49
USP4-201ENST00000265560 TAF1CQ15572 869 aaPredicted RBP18.09■□□□□ 0.49
USP4-201ENST00000265560 WDR59Q6PJI9 974 aa18.09■□□□□ 0.49
USP4-201ENST00000265560 LZTFL1Q9NQ48 299 aa18.09■□□□□ 0.49
USP4-201ENST00000265560 ABT1Q9ULW3 272 aaKnown RBP18.09■□□□□ 0.49
USP4-201ENST00000265560 DCAF8L1A6NGE4 600 aa18.09■□□□□ 0.49
USP4-201ENST00000265560 ATG7O95352 703 aa18.09■□□□□ 0.49
USP4-201ENST00000265560 GJB1P08034 283 aa18.09■□□□□ 0.49
USP4-201ENST00000265560 SLC9A1P19634 815 aa18.09■□□□□ 0.49
USP4-201ENST00000265560 ARID5AQ03989 594 aa18.09■□□□□ 0.49
USP4-201ENST00000265560 DMP1Q13316 513 aaPredicted RBP18.09■□□□□ 0.49
USP4-201ENST00000265560 PTPN14Q15678 1187 aa18.09■□□□□ 0.49
USP4-201ENST00000265560 CELF3Q5SZQ8 465 aaKnown RBP18.09■□□□□ 0.49
USP4-201ENST00000265560 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.09■□□□□ 0.49
USP4-201ENST00000265560 LRRC71Q8N4P6 559 aa18.09■□□□□ 0.49
USP4-201ENST00000265560 ERGIC2Q96RQ1 377 aa18.09■□□□□ 0.49
USP4-201ENST00000265560 GPR20Q99678 358 aa18.09■□□□□ 0.49
USP4-201ENST00000265560 IRX5P78411 483 aaPredicted RBP18.09■□□□□ 0.49
USP4-201ENST00000265560 EMC2Q15006 297 aa18.09■□□□□ 0.49
USP4-201ENST00000265560 ZNF792Q3KQV3 632 aa18.09■□□□□ 0.49
USP4-201ENST00000265560 PPP4R3CPQ6ZMV5 832 aa18.09■□□□□ 0.49
USP4-201ENST00000265560 RRAGAQ7L523 313 aa18.09■□□□□ 0.49
USP4-201ENST00000265560 FAM186BQ8IYM0 893 aa18.09■□□□□ 0.49
USP4-201ENST00000265560 OR8K1Q8NGG5 319 aa18.09■□□□□ 0.49
USP4-201ENST00000265560 SAAL1Q96ER3 474 aa18.09■□□□□ 0.49
USP4-201ENST00000265560 LSM14BQ9BX40 385 aaKnown RBP18.09■□□□□ 0.49
USP4-201ENST00000265560 TTYH3Q9C0H2 523 aa18.09■□□□□ 0.49
USP4-201ENST00000265560 CAPN11Q9UMQ6 739 aa18.09■□□□□ 0.49
USP4-201ENST00000265560 XRCC5P13010 732 aaKnown RBP18.08■□□□□ 0.49
USP4-201ENST00000265560 RPL13P26373 211 aaKnown RBP18.08■□□□□ 0.49
USP4-201ENST00000265560 GCLCP48506 637 aaPredicted RBP18.08■□□□□ 0.49
USP4-201ENST00000265560 IGBP1P78318 339 aa18.08■□□□□ 0.49
USP4-201ENST00000265560 CCDC62Q6P9F0 684 aa18.08■□□□□ 0.49
USP4-201ENST00000265560 TMEM161BQ8NDZ6 487 aa18.08■□□□□ 0.49
USP4-201ENST00000265560 NPLOC4Q8TAT6 608 aa18.08■□□□□ 0.49
USP4-201ENST00000265560 ELMO3Q96BJ8 720 aa18.08■□□□□ 0.49
USP4-201ENST00000265560 STRA6Q9BX79 667 aa18.08■□□□□ 0.49
USP4-201ENST00000265560 AZI2Q9H6S1 392 aa18.08■□□□□ 0.49
USP4-201ENST00000265560 LOXHD1Q8IVV2 1947 aa18.08■□□□□ 0.49
USP4-201ENST00000265560 EVPLQ92817 2033 aa18.08■□□□□ 0.48
USP4-201ENST00000265560 LRRN2O75325 713 aa18.08■□□□□ 0.48
USP4-201ENST00000265560 TGFB3P10600 412 aa18.08■□□□□ 0.48
USP4-201ENST00000265560 EPB41P11171 864 aaKnown RBP18.08■□□□□ 0.48
USP4-201ENST00000265560 DLG4P78352 724 aa18.08■□□□□ 0.48
USP4-201ENST00000265560 SHCBP1Q8NEM2 672 aa18.08■□□□□ 0.48
USP4-201ENST00000265560 LENG1Q96BZ8 264 aaPredicted RBP18.08■□□□□ 0.48
USP4-201ENST00000265560 PPP1R16BQ96T49 567 aa18.08■□□□□ 0.48
USP4-201ENST00000265560 MPHOSPH6Q99547 160 aaKnown RBP18.08■□□□□ 0.48
USP4-201ENST00000265560 ATP6V0A4Q9HBG4 840 aa18.08■□□□□ 0.48
USP4-201ENST00000265560 PLXNA1Q9UIW2 1896 aa18.08■□□□□ 0.48
USP4-201ENST00000265560 PLXNB2O15031 1838 aa18.07■□□□□ 0.48
USP4-201ENST00000265560 DGAT1O75907 488 aa18.07■□□□□ 0.48
USP4-201ENST00000265560 POLR2FP61218 127 aaKnown RBP18.07■□□□□ 0.48
USP4-201ENST00000265560 GJB7Q6PEY0 223 aa18.07■□□□□ 0.48
USP4-201ENST00000265560 ASAP3Q8TDY4 903 aa18.07■□□□□ 0.48
USP4-201ENST00000265560 ZHX1Q9UKY1 873 aaPredicted RBP18.07■□□□□ 0.48
USP4-201ENST00000265560 SNAI1O95863 264 aaPredicted RBP18.07■□□□□ 0.48
USP4-201ENST00000265560 COPB2P35606 906 aa18.07■□□□□ 0.48
USP4-201ENST00000265560 RGMBQ6NW40 437 aa18.07■□□□□ 0.48
USP4-201ENST00000265560 STXBP4Q6ZWJ1 553 aa18.07■□□□□ 0.48
USP4-201ENST00000265560 REXO1L1PQ8IX06 675 aa18.07■□□□□ 0.48
USP4-201ENST00000265560 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.07■□□□□ 0.48
USP4-201ENST00000265560 LRRIQ4A6NIV6 560 aa18.07■□□□□ 0.48
USP4-201ENST00000265560 SMTNP53814 917 aa18.07■□□□□ 0.48
USP4-201ENST00000265560 TAPT1Q6NXT6 567 aa18.07■□□□□ 0.48
USP4-201ENST00000265560 SYT10Q6XYQ8 523 aa18.07■□□□□ 0.48
USP4-201ENST00000265560 TSC1Q92574 1164 aa18.07■□□□□ 0.48
USP4-201ENST00000265560 SLC35C1Q96A29 364 aa18.07■□□□□ 0.48
USP4-201ENST00000265560 PDLIM7Q9NR12 457 aa18.07■□□□□ 0.48
USP4-201ENST00000265560 MORF4L1Q9UBU8 362 aa18.07■□□□□ 0.48
USP4-201ENST00000265560 TBX20Q9UMR3 447 aa18.07■□□□□ 0.48
USP4-201ENST00000265560 UNCXA6NJT0 531 aa18.06■□□□□ 0.48
USP4-201ENST00000265560 GNA14O95837 355 aa18.06■□□□□ 0.48
USP4-201ENST00000265560 ZNF286BP0CG31 522 aa18.06■□□□□ 0.48
USP4-201ENST00000265560 TTLL4Q14679 1199 aa18.06■□□□□ 0.48
USP4-201ENST00000265560 CACNA2D4Q7Z3S7 1137 aa18.06■□□□□ 0.48
USP4-201ENST00000265560 ZC3H3Q8IXZ2 948 aaKnown RBP18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms