RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 WHAMMQ8TF30 809 aa14.12□□□□□ -0.15
SNX1-201ENST00000261889 DDX4Q9NQI0 724 aaKnown RBP14.12□□□□□ -0.15
SNX1-201ENST00000261889 ZNF646O15015 1829 aaPredicted RBP14.11□□□□□ -0.15
SNX1-201ENST00000261889 XRCC5P13010 732 aaKnown RBP14.11□□□□□ -0.15
SNX1-201ENST00000261889 CLNS1AP54105 237 aaKnown RBP14.11□□□□□ -0.15
SNX1-201ENST00000261889 KCNJ2P63252 427 aa14.11□□□□□ -0.15
SNX1-201ENST00000261889 SNCBQ16143 134 aa14.11□□□□□ -0.15
SNX1-201ENST00000261889 LONRF1Q17RB8 773 aa14.11□□□□□ -0.15
SNX1-201ENST00000261889 MSL1Q68DK7 614 aa14.11□□□□□ -0.15
SNX1-201ENST00000261889 ZSWIM2Q8NEG5 633 aa14.11□□□□□ -0.15
SNX1-201ENST00000261889 LNX1Q8TBB1 728 aaPredicted RBP14.11□□□□□ -0.15
SNX1-201ENST00000261889 CUEDC2Q9H467 287 aa14.11□□□□□ -0.15
SNX1-201ENST00000261889 LAD1O00515 517 aa14.11□□□□□ -0.15
SNX1-201ENST00000261889 FGFR1OPO95684 399 aaKnown RBP14.11□□□□□ -0.15
SNX1-201ENST00000261889 RNF10Q8N5U6 811 aaKnown RBP14.11□□□□□ -0.15
SNX1-201ENST00000261889 SLC17A8Q8NDX2 589 aa14.11□□□□□ -0.15
SNX1-201ENST00000261889 FMO2Q99518 471 aa14.11□□□□□ -0.15
SNX1-201ENST00000261889 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.11□□□□□ -0.153e-7■■□□□ 11.8
SNX1-201ENST00000261889 RTFDC1Q9BY42 306 aaPredicted RBP14.11□□□□□ -0.15
SNX1-201ENST00000261889 DOCK2Q92608 1830 aa14.11□□□□□ -0.15
SNX1-201ENST00000261889 F8VZ95 297 aa14.11□□□□□ -0.15
SNX1-201ENST00000261889 EVI5O60447 810 aa14.11□□□□□ -0.15
SNX1-201ENST00000261889 MYL1P05976 194 aa14.11□□□□□ -0.15
SNX1-201ENST00000261889 H2AFZP0C0S5 128 aa14.11□□□□□ -0.15
SNX1-201ENST00000261889 H2AFVQ71UI9 128 aa14.11□□□□□ -0.15
SNX1-201ENST00000261889 CATSPER3Q86XQ3 398 aa14.11□□□□□ -0.15
SNX1-201ENST00000261889 KAT5Q92993 513 aa14.11□□□□□ -0.15
SNX1-201ENST00000261889 PAIP2Q9BPZ3 127 aaKnown RBP14.11□□□□□ -0.15
SNX1-201ENST00000261889 DDX23Q9BUQ8 820 aaKnown RBP14.11□□□□□ -0.15
SNX1-201ENST00000261889 KCTD10Q9H3F6 313 aa14.11□□□□□ -0.15
SNX1-201ENST00000261889 USP40Q9NVE5 1235 aa14.11□□□□□ -0.15
SNX1-201ENST00000261889 AGAP1Q9UPQ3 857 aa14.11□□□□□ -0.15
SNX1-201ENST00000261889 PVALEFA0A1B0GWK0 134 aa14.1□□□□□ -0.15
SNX1-201ENST00000261889 POLRMTO00411 1230 aaKnown RBP14.1□□□□□ -0.15
SNX1-201ENST00000261889 RASSF9O75901 435 aa14.1□□□□□ -0.15
SNX1-201ENST00000261889 NEBLO76041 1014 aa14.1□□□□□ -0.15
SNX1-201ENST00000261889 CLSTN1O94985 981 aa14.1□□□□□ -0.15
SNX1-201ENST00000261889 SF3B3Q15393 1217 aaKnown RBP14.1□□□□□ -0.15
SNX1-201ENST00000261889 DOK7Q18PE1 504 aa14.1□□□□□ -0.15
SNX1-201ENST00000261889 GKAP1Q5VSY0 366 aaPredicted RBP14.1□□□□□ -0.15
SNX1-201ENST00000261889 ZNF572Q7Z3I7 529 aaPredicted RBP14.1□□□□□ -0.15
SNX1-201ENST00000261889 CCDC65Q8IXS2 484 aa14.1□□□□□ -0.15
SNX1-201ENST00000261889 LRRC57Q8N9N7 239 aa14.1□□□□□ -0.15
SNX1-201ENST00000261889 DAGLBQ8NCG7 672 aa14.1□□□□□ -0.15
SNX1-201ENST00000261889 BANK1Q8NDB2 785 aa14.1□□□□□ -0.15
SNX1-201ENST00000261889 RNF25Q96BH1 459 aaPredicted RBP14.1□□□□□ -0.15
SNX1-201ENST00000261889 FAM167BQ9BTA0 163 aa14.1□□□□□ -0.15
SNX1-201ENST00000261889 PLCB1Q9NQ66 1216 aa14.1□□□□□ -0.15
SNX1-201ENST00000261889 PNMA3Q9UL41 463 aa14.1□□□□□ -0.15
SNX1-201ENST00000261889 GBP2P32456 591 aaPredicted RBP14.1□□□□□ -0.15
SNX1-201ENST00000261889 GJC1P36383 396 aa14.1□□□□□ -0.15
SNX1-201ENST00000261889 MESDQ14696 234 aa14.1□□□□□ -0.15
SNX1-201ENST00000261889 PPP2R5AQ15172 486 aa14.1□□□□□ -0.15
SNX1-201ENST00000261889 EPC2Q52LR7 807 aa14.1□□□□□ -0.15
SNX1-201ENST00000261889 LLGL2Q6P1M3 1020 aa14.1□□□□□ -0.15
SNX1-201ENST00000261889 TAB3Q8N5C8 712 aaPredicted RBP14.1□□□□□ -0.15
SNX1-201ENST00000261889 PSMD1Q99460 953 aa14.1□□□□□ -0.15
SNX1-201ENST00000261889 SPZ1Q9BXG8 430 aa14.1□□□□□ -0.15
SNX1-201ENST00000261889 ZBTB21Q9ULJ3 1066 aa14.1□□□□□ -0.15
SNX1-201ENST00000261889 UTP11Q9Y3A2 253 aaKnown RBP14.1□□□□□ -0.15
SNX1-201ENST00000261889 GH1P01241 217 aa14.09□□□□□ -0.15
SNX1-201ENST00000261889 GPSM2P81274 684 aa14.09□□□□□ -0.15
SNX1-201ENST00000261889 DYDC1Q8WWB3 177 aa14.09□□□□□ -0.15
SNX1-201ENST00000261889 RAB34Q9BZG1 259 aa14.09□□□□□ -0.15
SNX1-201ENST00000261889 LUC7LQ9NQ29 371 aaKnown RBP14.09□□□□□ -0.15
SNX1-201ENST00000261889 STK17AQ9UEE5 414 aa14.09□□□□□ -0.15
SNX1-201ENST00000261889 COG5Q9UP83 839 aa14.09□□□□□ -0.15
SNX1-201ENST00000261889 CHUKO15111 745 aa14.09□□□□□ -0.15
SNX1-201ENST00000261889 GDF11O95390 407 aa14.09□□□□□ -0.15
SNX1-201ENST00000261889 DDR1Q08345 913 aa14.09□□□□□ -0.15
SNX1-201ENST00000261889 NFIAQ12857 509 aa14.09□□□□□ -0.15
SNX1-201ENST00000261889 CBWD6Q4V339 395 aa14.09□□□□□ -0.15
SNX1-201ENST00000261889 CBWD3Q5JTY5 395 aa14.09□□□□□ -0.15
SNX1-201ENST00000261889 CBWD5Q5RIA9 395 aa14.09□□□□□ -0.15
SNX1-201ENST00000261889 C6orf89Q6UWU4 347 aa14.09□□□□□ -0.15
SNX1-201ENST00000261889 TPH2Q8IWU9 490 aa14.09□□□□□ -0.15
SNX1-201ENST00000261889 SCFD2Q8WU76 684 aa14.09□□□□□ -0.15
SNX1-201ENST00000261889 KCNK9Q9NPC2 374 aa14.09□□□□□ -0.15
SNX1-201ENST00000261889 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.09□□□□□ -0.15
SNX1-201ENST00000261889 PCDHA1Q9Y5I3 950 aa14.09□□□□□ -0.15
SNX1-201ENST00000261889 MYH7BA7E2Y1 1941 aa14.09□□□□□ -0.15
SNX1-201ENST00000261889 SNED1Q8TER0 1413 aa14.09□□□□□ -0.15
SNX1-201ENST00000261889 AFPP02771 609 aaKnown RBP14.09□□□□□ -0.15
SNX1-201ENST00000261889 ELF1P32519 619 aa14.09□□□□□ -0.15
SNX1-201ENST00000261889 DR1Q01658 176 aa14.09□□□□□ -0.15
SNX1-201ENST00000261889 GLE1Q53GS7 698 aaKnown RBP14.09□□□□□ -0.15
SNX1-201ENST00000261889 SWT1Q5T5J6 900 aaKnown RBP14.09□□□□□ -0.15
SNX1-201ENST00000261889 ZDHHC14Q8IZN3 488 aa14.09□□□□□ -0.15
SNX1-201ENST00000261889 FGFR1OP2Q9NVK5 253 aa14.09□□□□□ -0.15
SNX1-201ENST00000261889 SCAF8Q9UPN6 1271 aaKnown RBP14.09□□□□□ -0.15
SNX1-201ENST00000261889 CEP83Q9Y592 693 aa14.09□□□□□ -0.15
SNX1-201ENST00000261889 PCP11498 1178 aaKnown RBP14.08□□□□□ -0.15
SNX1-201ENST00000261889 ITIH3Q06033 890 aa14.08□□□□□ -0.15
SNX1-201ENST00000261889 DRAP1Q14919 205 aaPredicted RBP14.08□□□□□ -0.15
SNX1-201ENST00000261889 NT5DC3Q86UY8 548 aa14.08□□□□□ -0.15
SNX1-201ENST00000261889 NEDD1Q8NHV4 660 aa14.08□□□□□ -0.15
SNX1-201ENST00000261889 ATP8B4Q8TF62 1192 aa14.08□□□□□ -0.15
SNX1-201ENST00000261889 ATG4AQ8WYN0 398 aa14.08□□□□□ -0.15
SNX1-201ENST00000261889 XPO6Q96QU8 1125 aaKnown RBP14.08□□□□□ -0.15
SNX1-201ENST00000261889 NR3C1P04150 777 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms