RNA–Protein interactions for RNA: ENST00000261443.9

CSDE1-201, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-201ENST00000261443 PPP2R5EQ16537 467 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 HHATQ5VTY9 493 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 ZDHHC24Q6UX98 284 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 SLFN11Q7Z7L1 901 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 ECHDC2Q86YB7 292 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 PROM2Q8N271 834 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 RBBP8NLQ8NC74 664 aaPredicted RBP7.8□□□□□ -1.16
CSDE1-201ENST00000261443 FAM13CQ8NE31 585 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 UCMAQ8WVF2 138 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 HES6Q96HZ4 224 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 TMEM237Q96Q45 408 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 TGS1Q96RS0 853 aaKnown RBP7.8□□□□□ -1.16
CSDE1-201ENST00000261443 KIAA0391O15091 583 aaKnown RBP7.8□□□□□ -1.16
CSDE1-201ENST00000261443 RIPK2O43353 540 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 ATP5HO75947 161 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 AFPP02771 609 aaKnown RBP7.8□□□□□ -1.16
CSDE1-201ENST00000261443 GSTA2P09210 222 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 KRT13P13646 458 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 SLC5A1P13866 664 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 GM2AP17900 193 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 GNAQP50148 359 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 CCDC15Q0P6D6 951 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 SETDB1Q15047 1291 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 TNFAIP8L3Q5GJ75 292 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 SDCCAG8Q86SQ7 713 aaPredicted RBP7.8□□□□□ -1.16
CSDE1-201ENST00000261443 JAMLQ86YT9 394 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 ENDOVQ8N8Q3 282 aaKnown RBP7.8□□□□□ -1.16
CSDE1-201ENST00000261443 GLIS3Q8NEA6 775 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 CKAP2Q8WWK9 683 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 ARHGEF2Q92974 986 aaKnown RBP7.8□□□□□ -1.16
CSDE1-201ENST00000261443 LRMDAQ9H2I8 198 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 SH3GLB2Q9NR46 395 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 MAGEB6P1A0A0J9YX57 407 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 SNAP23O00161 211 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 NVLO15381 856 aaKnown RBP7.8□□□□□ -1.16
CSDE1-201ENST00000261443 CREB3O43889 395 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 CCNT1O60563 726 aaKnown RBP7.8□□□□□ -1.16
CSDE1-201ENST00000261443 H2AFZP0C0S5 128 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 CREB1P16220 341 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 TARSP26639 723 aaKnown RBP7.8□□□□□ -1.16
CSDE1-201ENST00000261443 SESN3P58005 492 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 DHX34Q14147 1143 aaKnown RBP7.8□□□□□ -1.16
CSDE1-201ENST00000261443 LETM2Q2VYF4 491 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 H2AFVQ71UI9 128 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 IRF2BP2Q7Z5L9 587 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 MYOCDQ8IZQ8 938 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 PHC3Q8NDX5 983 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 SUPT20HQ8NEM7 779 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 ATL2Q8NHH9 583 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 UBE2OQ9C0C9 1292 aaKnown RBP7.8□□□□□ -1.16
CSDE1-201ENST00000261443 MYLK2Q9H1R3 596 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 GANQ9H2C0 597 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 HAO1Q9UJM8 370 aa7.8□□□□□ -1.16
CSDE1-201ENST00000261443 TTC7AQ9ULT0 858 aaPredicted RBP7.8□□□□□ -1.16
CSDE1-201ENST00000261443 BZW2Q9Y6E2 419 aaKnown RBP7.8□□□□□ -1.16
CSDE1-201ENST00000261443 ITGB4P16144 1822 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 M0R2N6 131 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 COQ9O75208 318 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 STX2P32856 288 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 DRG2P55039 364 aaKnown RBP7.79□□□□□ -1.16
CSDE1-201ENST00000261443 CTSWP56202 376 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 MKRN3Q13064 507 aaKnown RBP7.79□□□□□ -1.16
CSDE1-201ENST00000261443 RCN2Q14257 317 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 CCDC6Q16204 474 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 LONRF1Q17RB8 773 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 MFSD5Q6N075 450 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 ANKLE1Q8NAG6 615 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 TTC8Q8TAM2 541 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 FAM136AQ96C01 138 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 IFT43Q96FT9 208 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 CDK5RAP3Q96JB5 506 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 MMTAG2Q9BU76 263 aaKnown RBP7.79□□□□□ -1.16
CSDE1-201ENST00000261443 ERVK-5Q9HDB9 667 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 DOCK2Q92608 1830 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 COL4A1P02462 1669 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 ENTPD5O75356 428 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 GH1P01241 217 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 SETSIPP0DME0 302 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 IMPDH2P12268 514 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 ACTN1P12814 892 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 FGFR2P21802 821 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 MAPK7Q13164 816 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 TRIM28Q13263 835 aaKnown RBP7.79□□□□□ -1.16
CSDE1-201ENST00000261443 FAM47AQ5JRC9 791 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 WASHC2DQ5SRD0 308 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 FOXB2Q5VYV0 432 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 CGB2Q6NT52 195 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 VSTM1Q6UX27 236 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 HEATR3Q7Z4Q2 680 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 CCDC25Q86WR0 208 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 LARP4BQ92615 738 aaKnown RBP7.79□□□□□ -1.16
CSDE1-201ENST00000261443 ERP27Q96DN0 273 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 ZNF333Q96JL9 665 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 PITPNM3Q9BZ71 974 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 ROPN1BQ9BZX4 212 aaPredicted RBP7.79□□□□□ -1.16
CSDE1-201ENST00000261443 DCLRE1BQ9H816 532 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 ROPN1Q9HAT0 212 aaPredicted RBP7.79□□□□□ -1.16
CSDE1-201ENST00000261443 NMRK1Q9NWW6 199 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 GRHL1Q9NZI5 618 aa7.79□□□□□ -1.16
CSDE1-201ENST00000261443 PARP2Q9UGN5 583 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms