RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 TRPV6Q9H1D0 765 aa14.77□□□□□ -0.05
LDLR-201ENST00000252444 TSPY1Q01534 308 aa14.76□□□□□ -0.05
LDLR-201ENST00000252444 RUFY4Q6ZNE9 571 aa14.76□□□□□ -0.05
LDLR-201ENST00000252444 TADA2BQ86TJ2 420 aa14.76□□□□□ -0.05
LDLR-201ENST00000252444 RIOX2Q8IUF8 465 aa14.76□□□□□ -0.05
LDLR-201ENST00000252444 ZNF526Q8TF50 670 aaPredicted RBP14.76□□□□□ -0.05
LDLR-201ENST00000252444 CCDC127Q96BQ5 260 aa14.76□□□□□ -0.05
LDLR-201ENST00000252444 TSPAN18Q96SJ8 248 aa14.76□□□□□ -0.05
LDLR-201ENST00000252444 NLRC4Q9NPP4 1024 aa14.76□□□□□ -0.05
LDLR-201ENST00000252444 INCENPQ9NQS7 918 aa14.76□□□□□ -0.05
LDLR-201ENST00000252444 LIMA1Q9UHB6 759 aaKnown RBP14.76□□□□□ -0.05
LDLR-201ENST00000252444 RRP9O43818 475 aaKnown RBP14.76□□□□□ -0.05
LDLR-201ENST00000252444 PNPLA4P41247 253 aa14.76□□□□□ -0.05
LDLR-201ENST00000252444 TATDN1Q6P1N9 297 aa14.76□□□□□ -0.05
LDLR-201ENST00000252444 TRIM9Q9C026 710 aa14.76□□□□□ -0.05
LDLR-201ENST00000252444 C5P01031 1676 aa14.76□□□□□ -0.05
LDLR-201ENST00000252444 SRGAP2BP0DMP2 458 aa14.76□□□□□ -0.05
LDLR-201ENST00000252444 CHADLQ6NUI6 762 aa14.76□□□□□ -0.05
LDLR-201ENST00000252444 STRCQ7RTU9 1775 aa14.76□□□□□ -0.05
LDLR-201ENST00000252444 NUP188Q5SRE5 1749 aa14.76□□□□□ -0.05
LDLR-201ENST00000252444 A6NJR5 290 aa14.76□□□□□ -0.05
LDLR-201ENST00000252444 HIP1RO75146 1068 aa14.76□□□□□ -0.05
LDLR-201ENST00000252444 VAMP7P51809 220 aa14.76□□□□□ -0.05
LDLR-201ENST00000252444 ARL13BQ3SXY8 428 aa14.76□□□□□ -0.05
LDLR-201ENST00000252444 SHC4Q6S5L8 630 aa14.76□□□□□ -0.05
LDLR-201ENST00000252444 H0YHG0 523 aa14.75□□□□□ -0.05
LDLR-201ENST00000252444 DPYDQ12882 1025 aa14.75□□□□□ -0.05
LDLR-201ENST00000252444 C4orf19Q8IY42 314 aa14.75□□□□□ -0.05
LDLR-201ENST00000252444 RDH13Q8NBN7 331 aa14.75□□□□□ -0.05
LDLR-201ENST00000252444 MYO1FO00160 1098 aa14.75□□□□□ -0.05
LDLR-201ENST00000252444 EMC2Q15006 297 aa14.75□□□□□ -0.05
LDLR-201ENST00000252444 FHDC1Q9C0D6 1143 aaPredicted RBP14.75□□□□□ -0.05
LDLR-201ENST00000252444 JRKLQ9Y4A0 524 aa14.75□□□□□ -0.05
LDLR-201ENST00000252444 COL2A1P02458 1487 aaPredicted RBP14.75□□□□□ -0.05
LDLR-201ENST00000252444 DDTLA6NHG4 134 aaPredicted RBP14.75□□□□□ -0.05
LDLR-201ENST00000252444 SUPT20HL2P0C7V6 817 aa14.75□□□□□ -0.05
LDLR-201ENST00000252444 PHBP35232 272 aa14.75□□□□□ -0.05
LDLR-201ENST00000252444 SNAP25P60880 206 aa14.75□□□□□ -0.05
LDLR-201ENST00000252444 PRPSAP1Q14558 356 aa14.75□□□□□ -0.05
LDLR-201ENST00000252444 HAUS6Q7Z4H7 955 aa14.75□□□□□ -0.05
LDLR-201ENST00000252444 SYT2Q8N9I0 419 aaPredicted RBP14.75□□□□□ -0.05
LDLR-201ENST00000252444 OPTNQ96CV9 577 aa14.75□□□□□ -0.05
LDLR-201ENST00000252444 PRKCBP05771 671 aa14.75□□□□□ -0.05
LDLR-201ENST00000252444 GJC1P36383 396 aa14.75□□□□□ -0.05
LDLR-201ENST00000252444 NFIAQ12857 509 aa14.75□□□□□ -0.05
LDLR-201ENST00000252444 BRD3Q15059 726 aa14.75□□□□□ -0.05
LDLR-201ENST00000252444 KRT31Q15323 416 aa14.75□□□□□ -0.05
LDLR-201ENST00000252444 NOL9Q5SY16 702 aaKnown RBP14.75□□□□□ -0.05
LDLR-201ENST00000252444 TMEM35BQ8NCS4 154 aa14.75□□□□□ -0.05
LDLR-201ENST00000252444 NLRP4Q96MN2 994 aa14.75□□□□□ -0.05
LDLR-201ENST00000252444 PXMP2Q9NR77 195 aa14.75□□□□□ -0.05
LDLR-201ENST00000252444 A0A1W2PRG0 241 aa14.74□□□□□ -0.05
LDLR-201ENST00000252444 FDPSP14324 419 aaKnown RBP14.74□□□□□ -0.05
LDLR-201ENST00000252444 TFAMQ00059 246 aaKnown RBP14.74□□□□□ -0.05
LDLR-201ENST00000252444 GOLGA8FQ08AF8 430 aa14.74□□□□□ -0.05
LDLR-201ENST00000252444 GOLGA8DPQ0D2H9 430 aa14.74□□□□□ -0.05
LDLR-201ENST00000252444 AFAP1L2Q8N4X5 818 aa14.74□□□□□ -0.05
LDLR-201ENST00000252444 SLC15A5A6NIM6 579 aa14.74□□□□□ -0.05
LDLR-201ENST00000252444 E9PMD0 336 aa14.74□□□□□ -0.05
LDLR-201ENST00000252444 HUS1O60921 280 aa14.74□□□□□ -0.05
LDLR-201ENST00000252444 DSTYKQ6XUX3 929 aa14.74□□□□□ -0.05
LDLR-201ENST00000252444 TOGARAM2Q6ZUX3 1019 aa14.74□□□□□ -0.05
LDLR-201ENST00000252444 ELMOD1Q8N336 334 aa14.74□□□□□ -0.05
LDLR-201ENST00000252444 SPATC1LQ9H0A9 340 aa14.74□□□□□ -0.05
LDLR-201ENST00000252444 UBN1Q9NPG3 1134 aa14.74□□□□□ -0.05
LDLR-201ENST00000252444 SUCLA2Q9P2R7 463 aaPredicted RBP14.74□□□□□ -0.05
LDLR-201ENST00000252444 NFASCO94856 1347 aa14.74□□□□□ -0.05
LDLR-201ENST00000252444 DUOXA2Q1HG44 320 aa14.74□□□□□ -0.05
LDLR-201ENST00000252444 RUBCNQ92622 972 aa14.74□□□□□ -0.05
LDLR-201ENST00000252444 V9GYY5 206 aaPredicted RBP14.74□□□□□ -0.05
LDLR-201ENST00000252444 CYP11B2P19099 503 aa14.74□□□□□ -0.05
LDLR-201ENST00000252444 DAAM2Q86T65 1068 aa14.74□□□□□ -0.05
LDLR-201ENST00000252444 ZNF677Q86XU0 584 aa14.74□□□□□ -0.05
LDLR-201ENST00000252444 PPP2R3CQ969Q6 453 aa14.74□□□□□ -0.05
LDLR-201ENST00000252444 EXOC4Q96A65 974 aa14.74□□□□□ -0.05
LDLR-201ENST00000252444 IPO11Q9UI26 975 aaKnown RBP14.74□□□□□ -0.05
LDLR-201ENST00000252444 COMMD10Q9Y6G5 202 aa14.74□□□□□ -0.05
LDLR-201ENST00000252444 ACTN1P12814 892 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 BFSP1Q12934 665 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 DNAJC24Q6P3W2 148 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 C11orf57Q6ZUT1 292 aaPredicted RBP14.73□□□□□ -0.05
LDLR-201ENST00000252444 RNF10Q8N5U6 811 aaKnown RBP14.73□□□□□ -0.05
LDLR-201ENST00000252444 CCDC89Q8N998 374 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 ZC3H11AO75152 810 aaKnown RBP eCLIP14.73□□□□□ -0.05
LDLR-201ENST00000252444 CTDNEP1O95476 244 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 AXLP30530 894 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 PRMT2P55345 433 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 RPS6P62753 249 aaKnown RBP14.73□□□□□ -0.05
LDLR-201ENST00000252444 ADGRA1Q86SQ6 560 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 AGO2Q9UKV8 859 aaKnown RBP14.73□□□□□ -0.05
LDLR-201ENST00000252444 SLC45A1Q9Y2W3 748 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 C4BP0C0L5 1744 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 MFAP3LO75121 409 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 ZBTB48P10074 688 aaPredicted RBP14.73□□□□□ -0.05
LDLR-201ENST00000252444 METTL7BQ6UX53 244 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 SIX6OS1Q8N1H7 587 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 TNIP3Q96KP6 325 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 LRRC4Q9HBW1 653 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 WDR35Q9P2L0 1181 aa14.73□□□□□ -0.05
LDLR-201ENST00000252444 A0A1W2PQJ5 194 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms