RNA–Protein interactions for RNA: ENSMUST00000109477.1

Ccdc88a-202, Transcript of Girdin, mousemouse

TSL 2 BASIC

Gene Ccdc88a, Length 1,716 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-202ENSMUST00000109477 Grin3bQ91ZU9 1003 aa23.21■■□□□ 1.31
Ccdc88a-202ENSMUST00000109477 Tnpo2Q99LG2 887 aaKnown RBP23.21■■□□□ 1.31
Ccdc88a-202ENSMUST00000109477 Clk2O35491 499 aa23.2■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Surf1P09925 306 aa23.2■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Tff2Q03404 129 aa23.2■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Sema5bQ60519 1093 aa23.2■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 CtcfQ61164 736 aaKnown RBP23.2■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Slc9b1Q8C0X2 565 aa23.2■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 N4bp3Q8C7U1 537 aa23.2■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Reep2Q8VCD6 254 aa23.2■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Dis3Q9CSH3 958 aaKnown RBP23.2■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Znf568E9PYI1 671 aa23.19■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Cyp2c39P56656 490 aa23.19■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Col9a2Q07643 688 aa23.19■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 SlmapQ3URD3 845 aa23.19■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Znf827Q505G8 1078 aa23.19■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Bmp3Q8BHE5 468 aa23.19■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Pnma3Q8JZW8 466 aa23.19■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Ccdc14Q8K2J4 934 aa23.19■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Smco2Q9DA21 347 aa23.19■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Prl2b1Q9DAZ2 228 aa23.19■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 PolkQ9QUG2 852 aa23.19■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Gm44511A0A0N4SW10 223 aa23.19■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Gm13128L7MU96 475 aa23.19■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Mdm4O35618 489 aa23.19■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Tp53P02340 387 aa23.19■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Irf8P23611 424 aa23.19■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Klrb1bP27812 223 aa23.19■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Serpina1eQ00898 413 aa23.19■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Gm5169Q5M8P2 212 aa23.19■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Ddx4Q61496 702 aa23.19■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 NfrkbQ6PIJ4 1296 aaKnown RBP23.19■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Dnm3Q8BZ98 863 aa23.19■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Usp37Q8C0R0 979 aa23.19■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Me2Q99KE1 589 aa23.19■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 PorcnQ9JJJ7 461 aa23.19■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Vstm4T1NXB5 319 aa23.19■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Robo3Q9Z2I4 1366 aa23.19■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Ep400Q8CHI8 3072 aaKnown RBP23.18■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Lama2Q60675 3118 aaKnown RBP23.18■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Nfx1B1AY10 1114 aaKnown RBP23.18■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Gm4841E9QAA8 417 aa23.18■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Oog4Q4G0C7 502 aa23.18■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Etaa1Q5SVT3 877 aa23.18■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Gigyf2Q6Y7W8 1291 aaKnown RBP23.18■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Atp6v0d2Q80SY3 350 aa23.18■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Vps52Q8C754 723 aaKnown RBP23.18■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Plcb4Q91UZ1 1175 aa23.18■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Ifi35Q9D8C4 286 aa23.18■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Tekt1Q9DAJ2 418 aa23.18■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Pidd1Q9ERV7 915 aa23.18■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Irs1P35569 1233 aa23.17■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 SnrpfP62307 86 aaKnown RBP23.17■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 LxnP70202 222 aa23.17■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Prmt6Q6NZB1 378 aa23.17■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Zfp943Q6NZP4 507 aa23.17■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Dnph1Q80VJ3 173 aa23.17■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Spice1Q8C804 860 aa23.17■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 BrdtQ91Y44 956 aa23.17■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Ubxn11Q9D572 484 aa23.17■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Kcnh2O35219 1162 aa23.16■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Abcd1P48410 736 aa23.16■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Adcy7P51829 1099 aa23.16■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 MafP54843 370 aa23.16■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Hps5P59438 1126 aa23.16■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Grm1P97772 1199 aa23.16■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Rab11fip4Q8BQP8 635 aa23.16■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Plekha4Q8VC98 588 aa23.16■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Tnfsf13bQ9WU72 309 aa23.16■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Ms4a4aA0A087WRT7 236 aa23.16■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Ap1b1O35643 943 aaKnown RBP23.16■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Paxip1Q6NZQ4 1056 aa23.16■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Ppp2r5aQ6PD03 486 aa23.16■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 ShbQ6PD21 503 aa23.16■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Haus4Q8BFT2 363 aa23.16■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Mei4Q8BRM6 389 aa23.16■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Tmem161bQ8C2L6 487 aa23.16■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Wrap53Q8VC51 532 aa23.16■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Acot11Q8VHQ9 594 aa23.16■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Ccdc96Q9CR92 584 aa23.16■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Rwdd2aQ9D9S3 292 aa23.16■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Cyp2s1Q9DBX6 501 aa23.16■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Jakmip2D3YXK0 820 aa23.15■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Cyth3O08967 399 aa23.15■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Tpp1O89023 562 aa23.15■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 MybP06876 636 aa23.15■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Dcaf17Q3TUL7 519 aa23.15■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Slc7a6osQ7TPE5 306 aa23.15■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 TbckQ8BM85 762 aa23.15■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Gpr180Q8BPS4 441 aa23.15■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Ino80bQ99PT3 375 aaKnown RBP23.15■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Snx10Q9CWT3 201 aa23.15■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Egfl6Q9JJZ5 550 aa23.15■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Ddx25Q9QY15 484 aa23.15■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Skor2A7M7C7 1008 aa23.14■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Pgrmc1O55022 195 aa23.14■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 RaraP11416 462 aa23.14■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Mcl1P97287 331 aa23.14■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Smyd5Q3TYX3 416 aa23.14■■□□□ 1.3
Ccdc88a-202ENSMUST00000109477 Krt31Q61765 416 aa23.14■■□□□ 1.3
Retrieved 100 of 22,080 RNA–protein pairs in 31.8 ms