RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Cpb2Q9JHH6 422 aa12.69□□□□□ -0.38
Trim56-201ENSMUST00000054384 Abcc1O35379 1528 aa12.69□□□□□ -0.38
Trim56-201ENSMUST00000054384 Atp1b3P97370 278 aa12.69□□□□□ -0.38
Trim56-201ENSMUST00000054384 Utp14bQ6EJB6 756 aaKnown RBP12.69□□□□□ -0.38
Trim56-201ENSMUST00000054384 Smg5Q6ZPY2 1017 aa12.69□□□□□ -0.38
Trim56-201ENSMUST00000054384 Pak4Q8BTW9 593 aa12.69□□□□□ -0.38
Trim56-201ENSMUST00000054384 Q8BWG4 1187 aa12.69□□□□□ -0.38
Trim56-201ENSMUST00000054384 BicraF8VPZ9 1578 aa12.69□□□□□ -0.38
Trim56-201ENSMUST00000054384 Pik3r1P26450 724 aa12.69□□□□□ -0.38
Trim56-201ENSMUST00000054384 Atp9bP98195 1146 aa12.69□□□□□ -0.38
Trim56-201ENSMUST00000054384 Nab2Q61127 525 aa12.69□□□□□ -0.38
Trim56-201ENSMUST00000054384 Tspyl4Q8VD63 406 aa12.69□□□□□ -0.38
Trim56-201ENSMUST00000054384 Lrrc63A6H694 637 aa12.69□□□□□ -0.38
Trim56-201ENSMUST00000054384 Bfsp2Q6NVD9 416 aa12.69□□□□□ -0.38
Trim56-201ENSMUST00000054384 Stambpl1Q76N33 436 aa12.69□□□□□ -0.38
Trim56-201ENSMUST00000054384 Atp6v0d2Q80SY3 350 aa12.69□□□□□ -0.38
Trim56-201ENSMUST00000054384 Galnt5Q8C102 930 aa12.69□□□□□ -0.38
Trim56-201ENSMUST00000054384 Pgm1Q9D0F9 562 aa12.69□□□□□ -0.38
Trim56-201ENSMUST00000054384 Zranb2Q9R020 330 aaKnown RBP12.69□□□□□ -0.38
Trim56-201ENSMUST00000054384 Mrpl40Q9Z2Q5 206 aa12.69□□□□□ -0.38
Trim56-201ENSMUST00000054384 Ankrd34bQ3UUF8 508 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Ifnl2Q4VK74 193 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Mknk2Q8CDB0 459 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Klhl11Q8CE33 709 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Unc45bQ8CGY6 931 aaKnown RBP12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Ing3Q8VEK6 421 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Angptl2Q9R045 493 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Mtmr2Q9Z2D1 643 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Scaf11E9PZM7 1456 aaKnown RBP12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Gm10250G3X9L6 160 aaKnown RBP12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Exosc10P56960 887 aaKnown RBP12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Kcna6Q61923 529 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Pde10aQ8CA95 790 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Vmn1r214Q8R279 367 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 PudpQ9D5U5 234 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Telo2Q9DC40 840 aaKnown RBP12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Atp5hQ9DCX2 161 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Ccdc22Q9JIG7 627 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Atxn10P28658 475 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 VcpQ01853 806 aaKnown RBP12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Acot6Q32Q92 419 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Phf21aQ6ZPK0 659 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Srgap2Q91Z67 1071 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Itpripl1A2ASA8 547 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Zbtb7aO88939 569 aaKnown RBP12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Abcb1bP06795 1276 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Gm13103Q4VAD2 491 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Samhd1Q60710 627 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Usp44Q8C2S0 711 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Vps33aQ9D2N9 598 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Tex21Q9R0U9 575 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 MypnQ5DTJ9 1315 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Klhl41A2AUC9 606 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Rnf10Q3UIW5 804 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Armcx2Q6A058 784 aaKnown RBP12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Cdk9Q99J95 372 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Ttc38A3KMP2 465 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Atp2c2A7L9Z8 944 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 AF366264G3X9P9 502 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Sipa1P46062 1037 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Art3Q8R2G4 371 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 ArpinQ9D0A3 226 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Cmtm5Q9D6G9 156 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Prpf4Q9DAW6 521 aaKnown RBP12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 NfkbizQ9EST8 728 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Stk32bQ9JJX8 414 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 ErmardE9Q048 622 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Terb1Q8C0V1 768 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Rnf31Q924T7 1066 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Castor1Q9CWQ8 331 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Cog1Q9Z160 980 aa12.68□□□□□ -0.38
Trim56-201ENSMUST00000054384 Ptk6Q64434 451 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Hps6Q8BLY7 805 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Arl8aQ8VEH3 186 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 PtprcP06800 1291 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Letm2Q7TNU7 480 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Sh3tc2Q80VA5 1289 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Tbc1d23Q8K0F1 684 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Gap43P06837 227 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Mybl1P51960 751 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Sv2cQ69ZS6 727 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Ephx4Q6IE26 359 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 KhnynQ80U38 671 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Bud13Q8R149 637 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Prpf6Q91YR7 941 aaKnown RBP12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 IydQ9DCX8 285 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Tlk2O55047 718 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Kif19Q99PT9 997 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Iqcf1Q9D9K8 182 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Myo3bQ1EG27 1305 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Gm36028A0A0U1RPM1 299 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Nck2O55033 380 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Dab2ipQ3UHC7 1189 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Adamts18Q4VC17 1219 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Scyl3Q9DBQ7 735 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Gm5152L7N200 190 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Cul4aQ3TCH7 759 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Lrrc8eQ66JT1 795 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 PigsQ6PD26 555 aaKnown RBP12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Trim47Q8C0E3 641 aa12.67□□□□□ -0.38
Retrieved 100 of 22,080 RNA–protein pairs in 30.4 ms