RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 PUS3Q9BZE2 481 aaKnown RBP3.83□□□□□ -1.8
SCN1A-221ENST00000641996 FBRSQ9HAH7 460 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 CYLDQ9NQC7 956 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 SAGE1Q9NXZ1 904 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 IFNA14P01570 189 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 DSTNP60981 165 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 SPATA1Q5VX52 437 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 ASB12Q8WXK4 309 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 PMEPA1Q969W9 287 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 TBC1D10AQ9BXI6 508 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 FHDC1Q9C0D6 1143 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-221ENST00000641996 ZNF287Q9HBT7 754 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 TRPV5Q9NQA5 729 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 AVENQ9NQS1 362 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-221ENST00000641996 ZFATQ9P243 1243 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 FBXO40Q9UH90 709 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 RP1P56715 2156 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 PAMP19021 973 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 NFE2L1Q14494 772 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 PTPN21Q16825 1174 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 GALNT7Q86SF2 657 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 CENPKQ9BS16 269 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 SLC38A10Q9HBR0 1119 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 IL1RAPL2Q9NP60 686 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 KLC4Q9NSK0 619 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 UCKL1Q9NWZ5 548 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 FARP1Q9Y4F1 1045 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-221ENST00000641996 SESN1Q9Y6P5 492 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 PTPDC1A2A3K4 754 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 DDX3YO15523 660 aaKnown RBP3.83□□□□□ -1.8
SCN1A-221ENST00000641996 ATP9AO75110 1047 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 ASMTLO95671 621 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 AKR1B1P15121 316 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 PBLDP30039 288 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-221ENST00000641996 HOXC13P31276 330 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 STARD3Q14849 445 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 CASC4Q6P4E1 433 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 TNKS2Q9H2K2 1166 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 NDE1Q9NXR1 346 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 ATXN10Q9UBB4 475 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 OPHN1O60890 802 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 PPP6R2O75170 966 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 BMP10O95393 424 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 S100A1P23297 94 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 CAMK2DQ13557 499 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 PABPC1LQ4VXU2 614 aaKnown RBP3.83□□□□□ -1.8
SCN1A-221ENST00000641996 DCAF17Q5H9S7 520 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-221ENST00000641996 FKBP14Q9NWM8 211 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 ERVK-19Q9WJR5 959 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 IPPQ9Y573 584 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 TAF4O00268 1085 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 PRPF6O94906 941 aaKnown RBP3.83□□□□□ -1.8
SCN1A-221ENST00000641996 S100A6P06703 90 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 ENO2P09104 434 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-221ENST00000641996 ATP6V1B1P15313 513 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 RIPK1Q13546 671 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 SUZ12Q15022 739 aaKnown RBP3.83□□□□□ -1.8
SCN1A-221ENST00000641996 METTL11BQ5VVY1 283 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 CRELD2Q6UXH1 353 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-221ENST00000641996 CCDC129Q6ZRS4 1044 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 STON2Q8WXE9 905 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 NUDT16Q96DE0 195 aaKnown RBP3.83□□□□□ -1.8
SCN1A-221ENST00000641996 CCDC138Q96M89 665 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 RAD21L1Q9H4I0 556 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 ARFGAP3Q9NP61 516 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 CTTNBP2NLQ9P2B4 639 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 ZNF225Q9UK10 706 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 TBX22Q9Y458 520 aa3.83□□□□□ -1.8
SCN1A-221ENST00000641996 B4E1Z4 1266 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 POTEB2H3BUK9 544 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 HIP1O00291 1037 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 PRDM1O75626 825 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 CFBP00751 764 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 FAM163BP0C2L3 166 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 RAP1GDS1P52306 607 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 SPATS1Q496A3 300 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 CCDC157Q569K6 752 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 GPR139Q6DWJ6 353 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 CCDC116Q8IYX3 515 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 ANKS1AQ92625 1134 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 ATP2A3Q93084 1043 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 ZNF285Q96NJ3 590 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 CARD6Q9BX69 1037 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 NT5C3AQ9H0P0 336 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 WBP11Q9Y2W2 641 aaKnown RBP3.82□□□□□ -1.8
SCN1A-221ENST00000641996 TELO2Q9Y4R8 837 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 SPO11Q9Y5K1 396 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 CIB2O75838 187 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 CHRM5P08912 532 aaPredicted RBP3.82□□□□□ -1.8
SCN1A-221ENST00000641996 CTNNA2P26232 953 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 KRT76Q01546 638 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 SNX31Q8N9S9 440 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 BRINP2Q9C0B6 783 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 NEK6Q9HC98 313 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 SIRPGQ9P1W8 387 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 PSIP1O75475 530 aaKnown RBP3.82□□□□□ -1.8
SCN1A-221ENST00000641996 KRT6AP02538 564 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 KRT6BP04259 564 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 SLC4A2P04920 1241 aa3.82□□□□□ -1.8
SCN1A-221ENST00000641996 KRT6CP48668 564 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms