RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 ECE1P42892 770 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 PTH2RP49190 550 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 RABGGTBP53611 331 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 SMAD3P84022 425 aaKnown RBP1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 STILQ15468 1287 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 SLC10A6Q3KNW5 377 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 TIGD2Q4W5G0 525 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 FKBP15Q5T1M5 1219 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 NBPF6Q5VWK0 638 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 GRAMD4Q6IC98 578 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 KRTAP5-11Q6L8G4 156 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 FBXO42Q6P3S6 717 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 FAM111BQ6SJ93 734 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 LRRC55Q6ZSA7 311 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 RHOUQ7L0Q8 258 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 ANKRD53Q8N9V6 530 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 RASGRP4Q8TDF6 673 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 DCAF4Q8WV16 495 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 GCDHQ92947 438 aaPredicted RBP1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 WNK4Q96J92 1243 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 NBPF4Q96M43 638 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 FAM193BQ96PV7 902 aaPredicted RBP1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 GPHA2Q96T91 129 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 ALG1Q9BT22 464 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 BTBD2Q9BX70 525 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 AMNQ9BXJ7 453 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 PDGFDQ9GZP0 370 aaPredicted RBP1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 OR10A5Q9H207 317 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 TOR3AQ9H497 397 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 PRDM13Q9H4Q3 707 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 CATSPERZQ9NTU4 200 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 BTBD7Q9P203 1132 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 ANKFY1Q9P2R3 1169 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 TRPS1Q9UHF7 1281 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 MAGEL2Q9UJ55 1249 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 SORCS3Q9UPU3 1222 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 RBM8AQ9Y5S9 174 aaKnown RBP1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 ATP23Q9Y6H3 246 aa1.78□□□□□ -2.12
SMARCB1-209ENST00000635578 PRDM2Q13029 1718 aa1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 A0A1W2PQU0 124 aa1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 PMS2P1A4D2B8 440 aa1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 MYADML2A6NDP7 307 aa1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 GOLGA6L6A8MZA4 724 aa1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 PROB1E7EW31 1015 aa1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 LPXNO60711 386 aa1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 SCAF4O95104 1147 aaKnown RBP1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 MPIG6BO95866 241 aa1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 C4BPAP04003 597 aaKnown RBP1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 GJA8P48165 433 aa1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 BPIFB4P59827 614 aa1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 GPR85P60893 370 aa1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 ST5P78524 1137 aa1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 NTRK3Q16288 839 aa1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 TMEM200BQ69YZ2 307 aa1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 RSPO2Q6UXX9 243 aaPredicted RBP1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 Q6YL49 198 aa1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 EEPD1Q7L9B9 569 aa1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 LRP10Q7Z4F1 713 aa1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 HDGFL2Q7Z4V5 671 aaPredicted RBP1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 OSTM1Q86WC4 334 aa1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 ZC3H7AQ8IWR0 971 aaKnown RBP1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 IFNL3Q8IZI9 196 aa1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 NLGN4XQ8N0W4 816 aa1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 HIPK4Q8NE63 616 aa1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 SUPT20HQ8NEM7 779 aa1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 PUM2Q8TB72 1066 aaKnown RBP eCLIP1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 THAP3Q8WTV1 239 aaPredicted RBP1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 ZNF428Q96B54 188 aa1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 MNTQ99583 582 aa1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 NCDNQ9UBB6 729 aa1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 RCAN3Q9UKA8 241 aa1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 FZD1Q9UP38 647 aa1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 EPB41L3Q9Y2J2 1087 aaPredicted RBP1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 CTDP1Q9Y5B0 961 aaPredicted RBP1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 COX11Q9Y6N1 276 aa1.77□□□□□ -2.13
SMARCB1-209ENST00000635578 RB1CC1Q8TDY2 1594 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 ASXL2Q76L83 1435 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 CENPVL1A0A0U1RR11 272 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 PRAMEF22A3QJZ6 481 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 E9PSI1 815 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 SCAMP3O14828 347 aaKnown RBP1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 IKBKBO14920 756 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 GJB6O95452 261 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 CAPNS1P04632 268 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 AMY2AP04746 511 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 SRGAP2CP0DJJ0 459 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 HK1P19367 917 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 AMY2BP19961 511 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 ZFP36P26651 326 aaKnown RBP1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 ERCC5P28715 1186 aaPredicted RBP1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 PLA2G5P39877 138 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 RGS19P49795 217 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 ADCY7P51828 1080 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 USP14P54578 494 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 JAM2P57087 298 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 IFRD2Q12894 506 aaPredicted RBP1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 PAK1Q13153 545 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 TCIRG1Q13488 830 aa1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 HSP90AA2PQ14568 343 aaPredicted RBP1.76□□□□□ -2.13
SMARCB1-209ENST00000635578 SEC23AQ15436 765 aa1.76□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms