RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 GSTA1P08263 222 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 GSTA2P09210 222 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 OCM2P0CE71 109 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 OCMP0CE72 109 aaPredicted RBP5.39□□□□□ -1.55
VPS13D-214ENST00000620676 PARP8Q8N3A8 854 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 PHC3Q8NDX5 983 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 AIM2O14862 343 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 ARHGEF9O43307 516 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 KRT36O76013 467 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 PHBP35232 272 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 MRPS35P82673 323 aaKnown RBP5.39□□□□□ -1.55
VPS13D-214ENST00000620676 KCNMA1Q12791 1236 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 DCUN1D2Q6PH85 259 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 PI16Q6UXB8 463 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 CCDC127Q96BQ5 260 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 NACA2Q9H009 215 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 PDP2Q9P2J9 529 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 MMP14P50281 582 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 OASLQ15646 514 aaKnown RBP5.39□□□□□ -1.55
VPS13D-214ENST00000620676 KDM7AQ6ZMT4 941 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 MIGA2Q7L4E1 593 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 LRRC59Q96AG4 307 aaKnown RBP5.39□□□□□ -1.55
VPS13D-214ENST00000620676 CATSPER2Q96P56 530 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 MRPL1Q9BYD6 325 aaKnown RBP5.39□□□□□ -1.55
VPS13D-214ENST00000620676 PCIF1Q9H4Z3 704 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 KCNA4P22459 653 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 CALML3P27482 149 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 ADSLP30566 484 aaPredicted RBP5.39□□□□□ -1.55
VPS13D-214ENST00000620676 TRAPPC10P48553 1259 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 AGGF1Q8N302 714 aaeCLIP5.39□□□□□ -1.55
VPS13D-214ENST00000620676 GIPC3Q8TF64 312 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 C6orf50Q9HD87 102 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 CYP2D7A0A087X1C5 515 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 CD44P16070 742 aaKnown RBP5.39□□□□□ -1.55
VPS13D-214ENST00000620676 INPP1P49441 399 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 PRPSAP1Q14558 356 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 USP49Q70CQ1 688 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 ATXN7L3BQ96GX2 97 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 FAM129AQ9BZQ8 928 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 ING2Q9H160 280 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 TMBIM4Q9HC24 238 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 PARNO95453 639 aaKnown RBP5.39□□□□□ -1.55
VPS13D-214ENST00000620676 VCAM1P19320 739 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 ARFIP2P53365 341 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 PDIA2Q13087 525 aaKnown RBP5.39□□□□□ -1.55
VPS13D-214ENST00000620676 MYOCDQ8IZQ8 938 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 GALNT8Q9NY28 637 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 NEMP1O14524 444 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 PTDSS1P48651 473 aaKnown RBP5.39□□□□□ -1.55
VPS13D-214ENST00000620676 GRIN1Q05586 938 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 GLE1Q53GS7 698 aaKnown RBP5.39□□□□□ -1.55
VPS13D-214ENST00000620676 CAVIN4Q5BKX8 364 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 ZNF658Q5TYW1 1059 aaPredicted RBP5.39□□□□□ -1.55
VPS13D-214ENST00000620676 HAUS3Q68CZ6 603 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 RIBC1Q8N443 379 aaPredicted RBP5.39□□□□□ -1.55
VPS13D-214ENST00000620676 HDAC11Q96DB2 347 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 PACSIN1Q9BY11 444 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 GCNT4Q9P109 453 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 DMGDHQ9UI17 866 aaKnown RBP5.39□□□□□ -1.55
VPS13D-214ENST00000620676 H3BRJ5 948 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 GUCY1A2P33402 732 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 EXOC3L4Q17RC7 722 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 FNBP1Q96RU3 617 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 NDNQ99608 321 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 RAPGEF3O95398 923 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 DEXIO95424 95 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 SHBGP04278 402 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 DNAJC3Q13217 504 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 ELMSAN1Q6PJG2 1045 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 TMC5Q6UXY8 1006 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 CROCCP2Q86T23 111 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 RIN3Q8TB24 985 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 DNAJC1Q96KC8 554 aaKnown RBP5.39□□□□□ -1.55
VPS13D-214ENST00000620676 FCER1AP12319 257 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 MAP3K5Q99683 1374 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 CYP21A2P08686 494 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 MRPL12P52815 198 aaKnown RBP5.39□□□□□ -1.55
VPS13D-214ENST00000620676 GPS1Q13098 491 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 LACRTQ9GZZ8 138 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 PAIP1Q9H074 479 aaKnown RBP5.39□□□□□ -1.55
VPS13D-214ENST00000620676 NDST4Q9H3R1 872 aa5.39□□□□□ -1.55
VPS13D-214ENST00000620676 ZBTB39O15060 712 aa5.38□□□□□ -1.55
VPS13D-214ENST00000620676 KCNQ4P56696 695 aa5.38□□□□□ -1.55
VPS13D-214ENST00000620676 CCDC85BQ15834 202 aaPredicted RBP5.38□□□□□ -1.55
VPS13D-214ENST00000620676 PI4K2BQ8TCG2 481 aa5.38□□□□□ -1.55
VPS13D-214ENST00000620676 MYLK2Q9H1R3 596 aa5.38□□□□□ -1.55
VPS13D-214ENST00000620676 GINM1Q9NU53 330 aa5.38□□□□□ -1.55
VPS13D-214ENST00000620676 ATXN10Q9UBB4 475 aa5.38□□□□□ -1.55
VPS13D-214ENST00000620676 ZNF532Q9HCE3 1301 aa5.38□□□□□ -1.55
VPS13D-214ENST00000620676 RTL9Q8NET4 1388 aa5.38□□□□□ -1.55
VPS13D-214ENST00000620676 GYPCP04921 128 aa5.38□□□□□ -1.55
VPS13D-214ENST00000620676 MAP4P27816 1152 aaKnown RBP5.38□□□□□ -1.55
VPS13D-214ENST00000620676 WDR44Q5JSH3 913 aa5.38□□□□□ -1.55
VPS13D-214ENST00000620676 DIS3LQ8TF46 1054 aaKnown RBP5.38□□□□□ -1.55
VPS13D-214ENST00000620676 CCDC68Q9H2F9 335 aa5.38□□□□□ -1.55
VPS13D-214ENST00000620676 UBE2TQ9NPD8 197 aaPredicted RBP5.38□□□□□ -1.55
VPS13D-214ENST00000620676 TMOD4Q9NZQ9 345 aa5.38□□□□□ -1.55
VPS13D-214ENST00000620676 SUCLA2Q9P2R7 463 aaPredicted RBP5.38□□□□□ -1.55
VPS13D-214ENST00000620676 SCAF11Q99590 1463 aaKnown RBP5.38□□□□□ -1.55
VPS13D-214ENST00000620676 STAT1P42224 750 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms